View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_low_34 (Length: 378)

Name: NF9879_low_34
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_low_34
NF9879_low_34
[»] chr7 (13 HSPs)
chr7 (99-213)||(44547312-44547427)
chr7 (17-100)||(44547723-44547806)
chr7 (214-269)||(24825880-24825935)
chr7 (214-269)||(37873417-37873472)
chr7 (214-269)||(24825559-24825614)
chr7 (214-269)||(32792783-32792838)
chr7 (214-269)||(32793103-32793158)
chr7 (204-269)||(37879170-37879235)
chr7 (217-269)||(9402563-9402615)
chr7 (214-269)||(11324368-11324423)
chr7 (217-266)||(11324056-11324105)
chr7 (334-366)||(11324271-11324303)
chr7 (334-366)||(32793006-32793038)
[»] chr3 (20 HSPs)
chr3 (31-97)||(2736837-2736903)
chr3 (133-213)||(2736918-2736999)
chr3 (207-269)||(33794427-33794489)
chr3 (214-265)||(20124655-20124706)
chr3 (214-269)||(40560779-40560834)
chr3 (214-269)||(5048004-5048059)
chr3 (214-267)||(2439770-2439823)
chr3 (214-267)||(5048326-5048379)
chr3 (208-269)||(14783729-14783790)
chr3 (222-269)||(2440090-2440137)
chr3 (214-269)||(31724353-31724408)
chr3 (214-266)||(14784044-14784096)
chr3 (214-266)||(31724671-31724723)
chr3 (334-366)||(2439993-2440025)
chr3 (334-366)||(5048124-5048156)
chr3 (334-366)||(20124776-20124808)
chr3 (323-366)||(33794542-33794585)
chr3 (324-366)||(14783845-14783887)
chr3 (334-366)||(31724473-31724505)
chr3 (214-246)||(33794774-33794806)
[»] chr4 (20 HSPs)
chr4 (208-269)||(23254697-23254758)
chr4 (214-269)||(38484461-38484516)
chr4 (214-269)||(41315899-41315954)
chr4 (214-269)||(41316218-41316273)
chr4 (214-269)||(55893491-55893546)
chr4 (215-269)||(15874229-15874283)
chr4 (214-267)||(42305905-42305958)
chr4 (214-269)||(23254377-23254432)
chr4 (214-269)||(42306224-42306279)
chr4 (214-266)||(38485191-38485243)
chr4 (214-265)||(15874552-15874603)
chr4 (214-269)||(20878693-20878748)
chr4 (214-264)||(55893214-55893264)
chr4 (325-366)||(55893322-55893363)
chr4 (214-258)||(20878988-20879032)
chr4 (323-366)||(20878802-20878845)
chr4 (323-366)||(41316008-41316051)
chr4 (326-366)||(23254600-23254640)
chr4 (334-366)||(38484582-38484614)
chr4 (334-366)||(42306024-42306056)
[»] scaffold0291 (2 HSPs)
scaffold0291 (214-269)||(11375-11430)
scaffold0291 (214-269)||(10954-11009)
[»] chr8 (6 HSPs)
chr8 (214-269)||(3068774-3068829)
chr8 (214-269)||(3069094-3069149)
chr8 (214-269)||(3305619-3305674)
chr8 (214-261)||(3305947-3305994)
chr8 (323-366)||(3305842-3305885)
chr8 (334-366)||(3068894-3068926)
[»] chr5 (9 HSPs)
chr5 (214-269)||(39760424-39760479)
chr5 (214-269)||(31155662-31155717)
chr5 (209-269)||(31156213-31156273)
chr5 (214-269)||(39761634-39761689)
chr5 (214-269)||(31155370-31155425)
chr5 (214-269)||(31155893-31155948)
chr5 (334-366)||(31155565-31155597)
chr5 (323-363)||(31156002-31156042)
chr5 (323-363)||(39761540-39761580)
[»] chr2 (8 HSPs)
chr2 (214-269)||(4732003-4732058)
chr2 (214-269)||(4731715-4731770)
chr2 (214-261)||(12414165-12414212)
chr2 (214-261)||(12426225-12426272)
chr2 (214-266)||(12413838-12413890)
chr2 (214-266)||(12425898-12425950)
chr2 (334-366)||(12414060-12414092)
chr2 (334-366)||(12426120-12426152)
[»] chr1 (13 HSPs)
chr1 (214-269)||(7710022-7710077)
chr1 (214-269)||(52331407-52331462)
chr1 (215-269)||(13618604-13618658)
chr1 (214-269)||(7709700-7709755)
chr1 (214-269)||(34492549-34492604)
chr1 (214-269)||(52331727-52331782)
chr1 (215-269)||(13618421-13618475)
chr1 (214-266)||(34492237-34492289)
chr1 (214-266)||(13618256-13618308)
chr1 (323-366)||(7709925-7709968)
chr1 (323-366)||(34492452-34492495)
chr1 (323-366)||(37646880-37646923)
chr1 (214-269)||(37646977-37647032)
[»] scaffold0184 (2 HSPs)
scaffold0184 (214-268)||(7018-7072)
scaffold0184 (214-269)||(7273-7328)
[»] scaffold1408 (1 HSPs)
scaffold1408 (215-268)||(1745-1798)
[»] scaffold0428 (3 HSPs)
scaffold0428 (215-268)||(7491-7544)
scaffold0428 (215-269)||(7795-7849)
scaffold0428 (323-366)||(7599-7642)
[»] scaffold0032 (1 HSPs)
scaffold0032 (217-269)||(33236-33288)
[»] chr6 (13 HSPs)
chr6 (214-266)||(16368923-16368975)
chr6 (214-265)||(29847003-29847054)
chr6 (216-269)||(20582638-20582691)
chr6 (214-266)||(33746712-33746764)
chr6 (214-265)||(6851249-6851300)
chr6 (214-269)||(16766580-16766635)
chr6 (214-269)||(33746971-33747026)
chr6 (214-265)||(16766289-16766340)
chr6 (214-266)||(16368641-16368693)
chr6 (214-266)||(29846789-29846841)
chr6 (214-269)||(11242292-11242347)
chr6 (214-269)||(11246371-11246426)
chr6 (323-366)||(33746821-33746864)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 44547427 - 44547312
Alignment:
Q  99 tatatattaaaaagtagtcaggtattttttccatttaaaattgaagatcaatgagtcactttttgtcccatcacagtaacatcttaaacaaactaatag- 197  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  44547427 tatatattaaaaagtagtcatgtattttttccatttaaaattaaagatcaatgagtcactttttgtcccatcacattaacatcttaaacaaactaatagt 44547328  T
Q  198 tgttacatttaaaatc 213  Q
    ||||||||||||||||    
T  44547327 tgttacatttaaaatc 44547312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 44547806 - 44547723
Alignment:
Q  17 gaatatgttcctgaaagttatccaaccaaagttaaacaatcaccacactctacttcctcattatatatacttgtctactaacta 100  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44547806 gaatatgttcctgaaagttgtccaaccaaagttgaacaatcaccacactctacttcctcattatatatacttgtctactaacta 44547723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 24825935 - 24825880
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  24825935 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttg 24825880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 37873417 - 37873472
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  37873417 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttg 37873472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 24825559 - 24825614
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||    
T  24825559 ggcttaaatattgcactcgtccctgcaaatatggctcgtttaagttttggtccttg 24825614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 32792783 - 32792838
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||||||||||||||||||| || |||||||| |||||||||||||||||||||    
T  32792783 ggcttaaatattgcactcgtccttgcaaatatggcccgtttaagttttggtccttg 32792838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 32793158 - 32793103
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||||||||||| |||||| | |||||||||||||||||||||    
T  32793158 ggcttaaatattgcactcgtccctgcaaatatagcccgtttaagttttggtccttg 32793103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 37879235 - 37879170
Alignment:
Q  204 atttaaaatcggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||| || ||||||||||||| ||||||||||| |||||||  |||||||||||||||||||||    
T  37879235 atttaatataggcttaaatattgtactcgtccctgcaaatatgacccgtttaagttttggtccttg 37879170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 9402563 - 9402615
Alignment:
Q  217 ttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  9402563 ttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttg 9402615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 11324423 - 11324368
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||| ||||||||| ||||||||  ||||||||||||||||||||    
T  11324423 ggcttaaatattgcattcgtccctgcaaatatggctcgtttaagttttggtccttg 11324368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 11324056 - 11324105
Alignment:
Q  217 ttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 266  Q
    |||||||||||||||||||||| |||||||| ||| ||||||||| ||||    
T  11324056 ttaaatattgcactcgtccctgcaaatatggcccgattaagttttcgtcc 11324105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 11324303 - 11324271
Alignment:
Q  334 catttaagtaatgacaagtcaccaaaatgccta 366  Q
    ||||||||| |||||||||||||||||||||||    
T  11324303 catttaagtcatgacaagtcaccaaaatgccta 11324271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 32793038 - 32793006
Alignment:
Q  334 catttaagtaatgacaagtcaccaaaatgccta 366  Q
    ||||||||| |||||||||||||||||||||||    
T  32793038 catttaagtcatgacaagtcaccaaaatgccta 32793006  T

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Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 2736837 - 2736903
Alignment:
Q  31 aagttatccaaccaaagttaaacaatcaccacactctacttcctcattatatatacttgtctactaa 97  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  2736837 aagttatccaaccaaagttgaacaatcaccacactctacttcctcattatatatacgtgtctactaa 2736903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 2736918 - 2736999
Alignment:
Q  133 ttaaaattgaagatcaatgagtcactttttgtcccatcacagtaacatcttaaacaaactaatag-tgttacatttaaaatc 213  Q
    |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  2736918 ttaaaatttaagataaatgagtcactttttgtcccatcacattaacatcttaaacaaagtaatagttgttacatttaaaatc 2736999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 33794427 - 33794489
Alignment:
Q  207 taaaatcggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33794427 taaaataggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttg 33794489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 20124655 - 20124706
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtc 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20124655 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtc 20124706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 40560834 - 40560779
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40560834 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttg 40560779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 5048004 - 5048059
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  5048004 ggcttaaatattgcactcgtccttgtaaatatggtccgtttaagttttggttcttg 5048059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 2439770 - 2439823
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcct 267  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  2439770 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcct 2439823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 5048379 - 5048326
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcct 267  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  5048379 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcct 5048326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 14783729 - 14783790
Alignment:
Q  208 aaaatcggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||| ||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||    
T  14783729 aaaataggcttaaatattgcacttgtccctgcaaatatggcccgtttaagttttggtccttg 14783790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 2440137 - 2440090
Alignment:
Q  222 tattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  2440137 tattgcactcgtccttgtaaatatggtccgtttaagttttggttcttg 2440090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 31724353 - 31724408
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||||||||||||||||||| || |||||||| |||||||| ||||||||||||    
T  31724353 ggcttaaatattgcactcgtccatgcaaatatggcccgtttaaattttggtccttg 31724408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 14784096 - 14784044
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 266  Q
    ||||||||||||||||||||||||| |||||||  ||||||||||||| ||||    
T  14784096 ggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttcgtcc 14784044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 31724723 - 31724671
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 266  Q
    |||||||||||||||||||||| || |||||||| ||||||||||||| ||||    
T  31724723 ggcttaaatattgcactcgtccttgcaaatatggcccgtttaagtttttgtcc 31724671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 2440025 - 2439993
Alignment:
Q  334 catttaagtaatgacaagtcaccaaaatgccta 366  Q
    |||||||||||||||||||||||||||||||||    
T  2440025 catttaagtaatgacaagtcaccaaaatgccta 2439993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 366
Target Start/End: Original strand, 5048124 - 5048156
Alignment:
Q  334 catttaagtaatgacaagtcaccaaaatgccta 366  Q
    |||||||||||||||||||||||||||||||||    
T  5048124 catttaagtaatgacaagtcaccaaaatgccta 5048156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 366
Target Start/End: Original strand, 20124776 - 20124808
Alignment:
Q  334 catttaagtaatgacaagtcaccaaaatgccta 366  Q
    |||||||||||||||||||||||||||||||||    
T  20124776 catttaagtaatgacaagtcaccaaaatgccta 20124808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 33794542 - 33794585
Alignment:
Q  323 acccctgagctcatttaagtaatgacaagtcaccaaaatgccta 366  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  33794542 acccctgggcccatttaagtcatgacaagtcaccaaaatgccta 33794585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 14783845 - 14783887
Alignment:
Q  324 cccctgagctcatttaagtaatgacaagtcaccaaaatgccta 366  Q
    |||||| || ||||||||| |||||||||||||||||||||||    
T  14783845 cccctgggcccatttaagtcatgacaagtcaccaaaatgccta 14783887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Original strand, 31724473 - 31724505
Alignment:
Q  334 catttaagtaatgacaagtcaccaaaatgccta 366  Q
    ||||||||| |||||||||||||||||||||||    
T  31724473 catttaagtcatgacaagtcaccaaaatgccta 31724505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 33794806 - 33794774
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatg 246  Q
    ||||||||||||||||||||||||| |||||||    
T  33794806 ggcttaaatattgcactcgtccctgcaaatatg 33794774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 23254758 - 23254697
Alignment:
Q  208 aaaatcggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23254758 aaaataggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttg 23254697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 38484461 - 38484516
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  38484461 ggcttaaatattgcactcgtctctgtaaatatggcccgtttaagttttggtccttg 38484516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 41315899 - 41315954
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  41315899 ggcttaaatattgcattcgtccctgcaaatatggtccgtttaagttttggtccttg 41315954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 41316273 - 41316218
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  41316273 ggcttaaatattgcactcgtccctgcaaatatggttcgtttaagttttggtccttg 41316218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 55893546 - 55893491
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  55893546 ggcttaaatattgcactcgtccctgtaaatatggctcgtttaagttttggtccttg 55893491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 15874229 - 15874283
Alignment:
Q  215 gcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  15874229 gcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttg 15874283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 42305905 - 42305958
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcct 267  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  42305905 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtcct 42305958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 23254377 - 23254432
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  23254377 ggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttg 23254432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 42306279 - 42306224
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||| ||||||||||  |||||||| |||||||||||||||||||||    
T  42306279 ggcttaaatattgaactcgtccctccaaatatggcccgtttaagttttggtccttg 42306224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 38485243 - 38485191
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 266  Q
    ||||||||||||||||||||||||| |||||||  ||||||||||||| ||||    
T  38485243 ggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttcgtcc 38485191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 15874603 - 15874552
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtc 265  Q
    ||||||| ||||||||||||||||| |||||||  |||||||||||||||||    
T  15874603 ggcttaagtattgcactcgtccctgcaaatatgccccgtttaagttttggtc 15874552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 20878693 - 20878748
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||||| ||| ||||| |||||| |||||||| |||||||||||||||||||||    
T  20878693 ggcttaaacattccactcatccctgcaaatatggcccgtttaagttttggtccttg 20878748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 55893214 - 55893264
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggt 264  Q
    |||||||||||||||| |||| ||| |||||||| ||||||||||||||||    
T  55893214 ggcttaaatattgcacccgtctctgcaaatatggcccgtttaagttttggt 55893264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 325 - 366
Target Start/End: Original strand, 55893322 - 55893363
Alignment:
Q  325 ccctgagctcatttaagtaatgacaagtcaccaaaatgccta 366  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  55893322 ccctgggctcatttaagtcatgacaagtcaccaaaatgccta 55893363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 20879032 - 20878988
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagt 258  Q
    |||||||||||| |||||||||||| |||||||| ||||||||||    
T  20879032 ggcttaaatattacactcgtccctgcaaatatggcccgtttaagt 20878988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 20878802 - 20878845
Alignment:
Q  323 acccctgagctcatttaagtaatgacaagtcaccaaaatgccta 366  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  20878802 acccctgggcccatttaagtcatgacaagtcaccaaaatgccta 20878845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 41316008 - 41316051
Alignment:
Q  323 acccctgagctcatttaagtaatgacaagtcaccaaaatgccta 366  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  41316008 acccctgggcccatttaagtcatgacaagtcaccaaaatgccta 41316051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 366
Target Start/End: Complemental strand, 23254640 - 23254600
Alignment:
Q  326 cctgagctcatttaagtaatgacaagtcaccaaaatgccta 366  Q
    |||| |||||||||||| |||||||||||||||||| ||||    
T  23254640 cctgggctcatttaagtcatgacaagtcaccaaaataccta 23254600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Original strand, 38484582 - 38484614
Alignment:
Q  334 catttaagtaatgacaagtcaccaaaatgccta 366  Q
    ||||||||| |||||||||||||||||||||||    
T  38484582 catttaagtcatgacaagtcaccaaaatgccta 38484614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Original strand, 42306024 - 42306056
Alignment:
Q  334 catttaagtaatgacaagtcaccaaaatgccta 366  Q
    ||||||||| |||||||||||||||||||||||    
T  42306024 catttaagtcatgacaagtcaccaaaatgccta 42306056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 11430 - 11375
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11430 ggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttg 11375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 10954 - 11009
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||    
T  10954 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaaattttggtccttg 11009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 3068774 - 3068829
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3068774 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttg 3068829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 3069149 - 3069094
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3069149 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttg 3069094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 3305619 - 3305674
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  3305619 ggcttaaatattgaactcgtccctgcaaatatggtccgtttaagttttggtccttg 3305674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 3305994 - 3305947
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagtttt 261  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||    
T  3305994 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagtttt 3305947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 3305885 - 3305842
Alignment:
Q  323 acccctgagctcatttaagtaatgacaagtcaccaaaatgccta 366  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  3305885 acccctgtgcccatttaagtcatgacaagtcaccaaaatgccta 3305842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Original strand, 3068894 - 3068926
Alignment:
Q  334 catttaagtaatgacaagtcaccaaaatgccta 366  Q
    ||||||||| |||||||||||||||||||||||    
T  3068894 catttaagtcatgacaagtcaccaaaatgccta 3068926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 39760424 - 39760479
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39760424 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttg 39760479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 31155717 - 31155662
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  31155717 ggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttg 31155662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 31156273 - 31156213
Alignment:
Q  209 aaatcggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||| ||||||||||||||| ||||||||  ||||||||||||||||||||||||| ||||    
T  31156273 aaataggcttaaatattgcattcgtccctacaaatatggtccgtttaagttttggttcttg 31156213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 39761689 - 39761634
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||| ||||||| ||||||||  ||||||||||||||||||||    
T  39761689 ggcttaaatattgcacttgtccctgcaaatatggcacgtttaagttttggtccttg 39761634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 31155370 - 31155425
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||| |||||||| || |||||||| |||||||| |||| |||||||    
T  31155370 ggcttaaatattgtactcgtccatgcaaatatggcccgtttaattttttgtccttg 31155425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 31155893 - 31155948
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||||||||||  |||||||||| |||||||   ||||||||||||||||||||    
T  31155893 ggcttaaatattgatctcgtccctgcaaatatgacacgtttaagttttggtccttg 31155948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 31155597 - 31155565
Alignment:
Q  334 catttaagtaatgacaagtcaccaaaatgccta 366  Q
    ||||||||| |||||||||||||||||||||||    
T  31155597 catttaagtcatgacaagtcaccaaaatgccta 31155565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 363
Target Start/End: Original strand, 31156002 - 31156042
Alignment:
Q  323 acccctgagctcatttaagtaatgacaagtcaccaaaatgc 363  Q
    ||||||| || ||||||||| ||||||||||||||||||||    
T  31156002 acccctgggcccatttaagttatgacaagtcaccaaaatgc 31156042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 39761580 - 39761540
Alignment:
Q  323 acccctgagctcatttaagtaatgacaagtcaccaaaatgc 363  Q
    ||||||| || ||||||||| ||||||||||||||||||||    
T  39761580 acccctgggcccatttaagtcatgacaagtcaccaaaatgc 39761540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 4732058 - 4732003
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  4732058 ggcttaaatattgcactcatccctgcaaatatggtccgtttaagttttggtccttg 4732003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 4731715 - 4731770
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||    
T  4731715 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagatttggtccttg 4731770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 12414212 - 12414165
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagtttt 261  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12414212 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagtttt 12414165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 12426272 - 12426225
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagtttt 261  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12426272 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagtttt 12426225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 12413838 - 12413890
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 266  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||    
T  12413838 ggcttaaatattgcacttgtccctgcaaatatggcccgtttaagttttcgtcc 12413890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 12425898 - 12425950
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 266  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||    
T  12425898 ggcttaaatattgcacttgtccctgcaaatatggcccgtttaagttttcgtcc 12425950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 12414092 - 12414060
Alignment:
Q  334 catttaagtaatgacaagtcaccaaaatgccta 366  Q
    ||||||||| |||||||||||||||||||||||    
T  12414092 catttaagtcatgacaagtcaccaaaatgccta 12414060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 12426152 - 12426120
Alignment:
Q  334 catttaagtaatgacaagtcaccaaaatgccta 366  Q
    ||||||||| |||||||||||||||||||||||    
T  12426152 catttaagtcatgacaagtcaccaaaatgccta 12426120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 7710077 - 7710022
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  7710077 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttg 7710022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 52331407 - 52331462
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  52331407 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttg 52331462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 13618658 - 13618604
Alignment:
Q  215 gcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  13618658 gcttaaatattgcattcgtccctgcaaatatggtccgtttaagttttggtccttg 13618604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 7709700 - 7709755
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||    
T  7709700 ggcttaaatattgaactcgtccctgcaaatatggcccgtttaagttttggtccttg 7709755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 34492604 - 34492549
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||||||||||||||||| |||| |||||||||| |||||||||||||||||||    
T  34492604 ggcttaaatattgcactcgttcctgcaaatatggtctgtttaagttttggtccttg 34492549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 52331782 - 52331727
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||    
T  52331782 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttgatccttg 52331727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 13618475 - 13618421
Alignment:
Q  215 gcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||||||||||| ||||||||| |||||||| |||||||||||||||||||||    
T  13618475 gcttaaatattgcattcgtccctgcaaatatggcccgtttaagttttggtccttg 13618421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 34492237 - 34492289
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 266  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||    
T  34492237 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcgtcc 34492289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 13618256 - 13618308
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 266  Q
    |||||||||||||||||| |||||| |||||||  ||||||||||||| ||||    
T  13618256 ggcttaaatattgcactcttccctgcaaatatgacccgtttaagttttagtcc 13618308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 7709968 - 7709925
Alignment:
Q  323 acccctgagctcatttaagtaatgacaagtcaccaaaatgccta 366  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  7709968 acccctgtgcccatttaagtcatgacaagtcaccaaaatgccta 7709925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 34492495 - 34492452
Alignment:
Q  323 acccctgagctcatttaagtaatgacaagtcaccaaaatgccta 366  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  34492495 acccctgggcccatttaagtcatgacaagtcaccaaaatgccta 34492452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 323 - 366
Target Start/End: Complemental strand, 37646923 - 37646880
Alignment:
Q  323 acccctgagctcatttaagtaatgacaagtcaccaaaatgccta 366  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  37646923 acccctgggcccatttaagtcatgacaagtcaccaaaatgccta 37646880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 37647032 - 37646977
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||| ||||  ||| ||||||||  ||||||||||||||||||||    
T  37647032 ggcttaaatattgcattcgtttctgcaaatatggctcgtttaagttttggtccttg 37646977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 7018 - 7072
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcctt 268  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  7018 ggcttaaatattgcactcgttcctgcaaatatggtccgtttaagttttggtcctt 7072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 7328 - 7273
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||||||||||    
T  7328 ggcttaaatattggattcgtccctgcaaatatggcccgtttaagttttggtccttg 7273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 1745 - 1798
Alignment:
Q  215 gcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcctt 268  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  1745 gcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcctt 1798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 7491 - 7544
Alignment:
Q  215 gcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcctt 268  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  7491 gcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcctt 7544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 7849 - 7795
Alignment:
Q  215 gcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||||||||||||    
T  7849 gcttaaatattgcactcgtccctgcaaatatggcacgtttaagttttggtccttg 7795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 7599 - 7642
Alignment:
Q  323 acccctgagctcatttaagtaatgacaagtcaccaaaatgccta 366  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  7599 acccctgggcccatttaagtcatgacaagtcaccaaaatgccta 7642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 33288 - 33236
Alignment:
Q  217 ttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  33288 ttaaatattgcactcgtccctgcaaatatggtccgtttatgttttggtccttg 33236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 16368975 - 16368923
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 266  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  16368975 ggcttaaatattgcactcgtccctgcaaatatgatccgtttaagttttggtcc 16368923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 265
Target Start/End: Complemental strand, 29847054 - 29847003
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtc 265  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  29847054 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtc 29847003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 20582638 - 20582691
Alignment:
Q  216 cttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||||||||||  |||||| |||||||||||||||||||||||    
T  20582638 cttaaatattgcactcgtccctacaaatatagtccgtttaagttttggtccttg 20582691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 33746712 - 33746764
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 266  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||    
T  33746712 ggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcgtcc 33746764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 6851249 - 6851300
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtc 265  Q
    |||||||||||||||||||||| || ||||||| ||||||||||||||||||    
T  6851249 ggcttaaatattgcactcgtccatgcaaatatgatccgtttaagttttggtc 6851300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 16766635 - 16766580
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    ||||||||||||||| ||||||||| |||||||| ||||||| |||||||||||||    
T  16766635 ggcttaaatattgcaatcgtccctgcaaatatggcccgtttatgttttggtccttg 16766580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 33747026 - 33746971
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||||||||||||| |||||||| |||||||| ||||||||||||| |||||||    
T  33747026 ggcttaaatattgcacccgtccctgcaaatatggcccgtttaagttttcgtccttg 33746971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 16766289 - 16766340
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtc 265  Q
    ||||||||||||||||||||||||| |||||||  || ||||||||||||||    
T  16766289 ggcttaaatattgcactcgtccctgcaaatatgacccatttaagttttggtc 16766340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 16368641 - 16368693
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 266  Q
    ||||||||||||||||||||||||| ||||||||   ||||||||||| ||||    
T  16368641 ggcttaaatattgcactcgtccctgcaaatatggcatgtttaagttttcgtcc 16368693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 29846789 - 29846841
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtcc 266  Q
    ||||||||||||||||||||||||| ||||||||  | |||||||||| ||||    
T  29846789 ggcttaaatattgcactcgtccctgcaaatatgggtcatttaagttttcgtcc 29846841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 11242292 - 11242347
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||||||||||||||||||||  |||||||||  | ||||||||||| ||||||    
T  11242292 ggcttaaatattgcactcgtccccataaatatggctcatttaagttttgatccttg 11242347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 11246426 - 11246371
Alignment:
Q  214 ggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtccttg 269  Q
    |||||||||||||||||| |||||| ||||||| || ||||||||||  |||||||    
T  11246426 ggcttaaatattgcactcatccctgcaaatatgatctgtttaagtttgagtccttg 11246371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 33746821 - 33746864
Alignment:
Q  323 acccctgagctcatttaagtaatgacaagtcaccaaaatgccta 366  Q
    ||||||| || ||||||||| |||||||||||||||||||||||    
T  33746821 acccctgggcccatttaagtcatgacaagtcaccaaaatgccta 33746864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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