View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_36 (Length: 367)
Name: NF9879_low_36
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 33811324 - 33811665
Alignment:
| Q |
18 |
gattattccagagaatagaataggtgtgatagtcctcagtgggatcaaaccaaagcatatgtctcatctcacgattaccggtccaattcattcttgtaca |
117 |
Q |
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| T |
33811324 |
gattattccagagaatagaataggtgtgatagtcctcagtgggatcaaaccaaagcatatgtctcatctcacgattaccggtccaattcattcttgtaca |
33811423 |
T |
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| Q |
118 |
catttgtttcaatcaaatatgattgtcctgttctgtttcccaaaaactcaaaatcaagctcatctctttctggccctgcaccattttctgtacacatctg |
217 |
Q |
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| T |
33811424 |
catttgtttgaatcaaatatgcttgtcctgttctgtttcccaaaaactcaaaatcaagctcatctctttctggccctgcaccattttctgtacacatctg |
33811523 |
T |
|
| Q |
218 |
caacaatcccctattcttgttaacacttcatcaattggattcataaaaacacaaaaagaaattcatcaaagaatgcacatttagtactaaatttcaatat |
317 |
Q |
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| T |
33811524 |
caacaatcccctattcttgttaacacttcatcaattggattcataaaaacacaaaaaggaattcatcaaagaatgcacatttagtactaaatttcaatat |
33811623 |
T |
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| Q |
318 |
tagtgtaattgtttacttacataataagctgtcacaacacca |
359 |
Q |
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| T |
33811624 |
taatgtaattgtttacttacataataagctgtcacaacacca |
33811665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 47495416 - 47495080
Alignment:
| Q |
18 |
gattattccagagaatagaataggtgtgatagtcctcagtgggatcaaaccaaagcatatgtctcatctcacgattaccggtccaattcattcttgtaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47495416 |
gattattccagagaatagaataggtgtgatagtcctcagtgggatcaaaccaaagcatatgtctcatctcacgattaccggtcc----cattcttgtaca |
47495321 |
T |
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| Q |
118 |
catttgtttcaatcaaatatgattgtcctgttctgtttcccaaaaactcaaaatcaagctcatctctttctggccctgcaccattttctgtacacatctg |
217 |
Q |
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||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47495320 |
catttgtttgaatcaagtatggttgtcctgttctgtttcccaaaaactcaaaatcaagctcatctctttctggccctgcaccattttctgtacacatctg |
47495221 |
T |
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| Q |
218 |
caacaatcccctattcttgttaacacttcatcaattggattcataaaaacacaaaaagaaattcatcaaagaatgcacatttagtactaaatttcaatat |
317 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||| |
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| T |
47495220 |
caacaatcccctattcttgttaacactccatcaattggattcataaaaacacaaaaaggaattcaacaaagaatgcacatttagtactaaa-ttcaatat |
47495122 |
T |
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| Q |
318 |
tagtgtaattgtttacttacataataagctgtcacaacacca |
359 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47495121 |
taatgtaattgtttacttacataataagctgtcacaacacca |
47495080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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