View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_37 (Length: 363)
Name: NF9879_low_37
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 55301647 - 55301406
Alignment:
| Q |
1 |
atacacagacataaacatgctaaaaatagtagaatacaaggacaagattgatgaatgaatatacctgcactccgtcagcgccaaatacctcccgaagcat |
100 |
Q |
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| T |
55301647 |
atacacagacataaacatgctaaaaatagtagaatacaaggacaagattgatgaatgaatatacctgcactccgtcagcgccaaatacctcccgaagcat |
55301548 |
T |
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| Q |
101 |
agcccgtatcatggatctctttcctacatttgggggtccttcaaatataaaatgattacagccacacccacctttaacctatatacgcagcaattacaaa |
200 |
Q |
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| T |
55301547 |
agcccgtatcatggatctctttcctacatttgggggtccttcaaatataaaatgattacagccacacccacctttaacctatatacgcagcaattacaaa |
55301448 |
T |
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| Q |
201 |
agaaattatattacctatgttgggcatgcagttgtgatcttg |
242 |
Q |
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| T |
55301447 |
agaaattatattacctatgttgggcatgcagttgtgatcttg |
55301406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 297 - 346
Target Start/End: Complemental strand, 55301351 - 55301302
Alignment:
| Q |
297 |
cgaagcatcatattcttcttaccaatgctttcagctgaagtgctttatct |
346 |
Q |
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| T |
55301351 |
cgaagcatcatattcttcttaccaatgctttcagctgaagtgctttatct |
55301302 |
T |
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