View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_39 (Length: 360)
Name: NF9879_low_39
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 17 - 350
Target Start/End: Original strand, 21328092 - 21328425
Alignment:
| Q |
17 |
aatagctgcaataatggaatactagaagtgaatggtttcaagaaagaacgtagatacaaatgaatgaatatccctacacggtgctaagctcttacaaagg |
116 |
Q |
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| T |
21328092 |
aatagctgcaataatggaatactagaagtgaatggtttctagaaagaacgtagatacaaatgaatgaatatccctatacggtgctaagctcttacaaagg |
21328191 |
T |
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| Q |
117 |
aaaataccctctatccgtaacgaacaatgattttcctgagatgccccataattctatttgacaacattggatggcatattcgaattttcactattggccg |
216 |
Q |
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| T |
21328192 |
aaaatgccctctatccgtaacgaacaatgattttcctgagatgccccataattctatttgacaacattggatggcatattcgaattttcactattggccg |
21328291 |
T |
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| Q |
217 |
ccatttgtcagctacaattgctactaaaaacacaactcaatggaattttgcatagcgcctaggggccgctgcaagaggaataaccttaaaaccccaaact |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
21328292 |
ccatttgtcagctacaattgctactaaaaacacaactcaacggaattttgcatagcgcctaggggccgctacaagaggtataaccttaaaaccccaaact |
21328391 |
T |
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| Q |
317 |
gctatgtgattcacaagcaacatgtggtcctttg |
350 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
21328392 |
gctatgtgattcacaagcaacatgtggtcctttg |
21328425 |
T |
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