View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_4 (Length: 716)
Name: NF9879_low_4
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 697
Target Start/End: Original strand, 22460035 - 22460716
Alignment:
| Q |
1 |
tattcagattggttaacttgtgggagtaaataaataatttagttttgaatgtggaatattgcttctgcagtgtgcagtggtacaatttagacatagtaaa |
100 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
22460035 |
tattcggattggttaacttgtgggagtaaataaataatttagttttgaatgtggaatattgcttctgcagtgttcagtggtacaatttagacatagtaaa |
22460134 |
T |
|
| Q |
101 |
gtccaagagaagactttaaggagtatattggttttgtcttttgaggaagttatatcgctgactttaacaatttgttgcttaaagaacaacatctcttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22460135 |
gtccaagagaagactttaaggagtatattggttttgtcttttgaggaagttatatcgctgactttaacaatttgttgcttaaagaacaacatctcttcaa |
22460234 |
T |
|
| Q |
201 |
tggctagcaacaagatctcatcaatggctactcataggagctagcttctagcatcaaatttatgtttctaaacattatcaaaatcttcaatgg-tttggt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
22460235 |
tggctagcaacaagatctcatcaatggctactcataggagctagcttctagcatcaaatttatgtttctaaacattatcaaaatcttcaatggttttggt |
22460334 |
T |
|
| Q |
300 |
atttatgaaatagtatcagaaattaaacgatagaaaatgttatcttgtaccctaaagatacaatcaatgaaatcaaaagtagaagnnnnnnnnnnnnnnn |
399 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||| |||||||||||| ||| ||| |
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| T |
22460335 |
attcatgaaatagtatcagaaattaaacgatagaagatgttatcttgtgccctaaagacacaattaatgaaatcaaatgtaaaag--ttttttttcaaaa |
22460432 |
T |
|
| Q |
400 |
nttatacatttaatacgttaaagttatcttttcaatattaagtctgctttttaatttaatttttaacttcttaacttagaactcaaattagcatgacttc |
499 |
Q |
| |
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|| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
22460433 |
attgtacatttaatacattaaagttatcttttcaatattaagtctgtcttttaattttatttttaacttcttagcttagaactcaagttagcatgacttc |
22460532 |
T |
|
| Q |
500 |
aacacagtttatgataatattcttcttaacgggatcccccttactataaccaaacttttcatgagcatgaataaacacatattgtttcaatttcttatca |
599 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22460533 |
aacacagtttatgataattttcttcttaacggaatcccccttactataaccaaacttttcatgagcatgaataaacacatattgtttcaatttcttatcc |
22460632 |
T |
|
| Q |
600 |
attttgaacttatcatctattgcaaatcacgtcaaagaataaatttagacagtttcttttttcatcctataaatttctcacgcgttttatatagttca |
697 |
Q |
| |
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|||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||| |||||||||||||||||||| |||||| |
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| T |
22460633 |
attttgaacttatcatctattg-----cacgt---------aatttagaccgtttctttttccatcctattaatttctcacgcgttttatacagttca |
22460716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 686
Target Start/End: Original strand, 22483016 - 22483683
Alignment:
| Q |
1 |
tattcagattggttaacttgtgggagtaaataaataatttagttttgaatgtggaatattgcttctgcagtgtgcagtggtacaatttagacatagtaaa |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
22483016 |
tattcggattggttaacttgtgggagtaaataaataatttagttttgaatgtggaatattgcttctgcagtgttcagtggtacaatttagacatagtaaa |
22483115 |
T |
|
| Q |
101 |
gtccaagagaagactttaaggagtatattggttttgtcttttgaggaagttatatcgctgactttaacaatttgttgcttaaagaacaacatctcttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22483116 |
gtccaagagaagactttaaggagtatattggttttgtcttttgaggaagttatatcgctgactttaacaatttgttgcttaaagaacaacatctcttcaa |
22483215 |
T |
|
| Q |
201 |
tggctagcaacaagatctcatcaatggctactcataggagctagcttctagcatcaaatttatgtttctaaacattatcaaaatcttcaatggtttggta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22483216 |
tggctagcaacaagatctcatcaatggctactcataggagctagcttctagcatcaaatttatgtttctaaacattatcaaaatcttcaatggtttggtt |
22483315 |
T |
|
| Q |
301 |
tttatgaaatagtatcagaaattaaacgatagaaaatgttatcttgtaccctaaagatacaatcaatgaaatcaaaagtagaagnnnnnnnnnnnnnnnn |
400 |
Q |
| |
|
|| |||||| ||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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|
| T |
22483316 |
ttcatgaaa---tatcaaaaattaaacgatagaaaatgttatcttgttccctaaagacacaatcaatgaaatcaaaagtagaag--tttttaaaaaaaaa |
22483410 |
T |
|
| Q |
401 |
ttatacatttaatacgttaaagttatcttttcaatattaagtctgctttttaatttaatttttaacttcttaacttagaactca---aattagcatgact |
497 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
22483411 |
ttgtacatttaatacgttaaaattatcttttcaatattaagtttgccttttaattttatttttaacttcttaacttagaactcaagtacttagcatgact |
22483510 |
T |
|
| Q |
498 |
tcaacacagtttatgataatattcttcttaacgggatcccccttactataaccaaacttttcatgagcatgaataaacacatattgtttcaatttcttat |
597 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22483511 |
ccaacacactttatgataattttcttctcaacgggatcccccttactataaccaa--ttagcatgagcatgaataaacacatattgtttcaatttcttat |
22483608 |
T |
|
| Q |
598 |
caattttgaacttatcatctattgcaaatcacgtcaaagaataaatttagacagtttcttttttcatcctataaatttctcacgcgttt |
686 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||| |||||||||| ||||||| |||||||||||||||| |
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|
| T |
22483609 |
caattttgaacttatcat--------------gtcaaagaataaatgtagaccgtttctttttctatcctatgaatttctcacgcgttt |
22483683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 419 - 476
Target Start/End: Original strand, 21190966 - 21191023
Alignment:
| Q |
419 |
aaagttatcttttcaatattaagtctgctttttaatttaatttttaacttcttaactt |
476 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||| |
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|
| T |
21190966 |
aaagttatcttttcaatattaagtttgtcttttaatttcatttttaccttcttaactt |
21191023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 419 - 476
Target Start/End: Original strand, 27247225 - 27247282
Alignment:
| Q |
419 |
aaagttatcttttcaatattaagtctgctttttaatttaatttttaacttcttaactt |
476 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||| |
|
|
| T |
27247225 |
aaagttatcttttcaatattaagtttgtcttttaattttatttttaccttcttaactt |
27247282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 419 - 476
Target Start/End: Original strand, 37209886 - 37209943
Alignment:
| Q |
419 |
aaagttatcttttcaatattaagtctgctttttaatttaatttttaacttcttaactt |
476 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| ||||||| ||||||||||| |
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|
| T |
37209886 |
aaagttatcttttcaatattaagtttgtcttttaattccatttttagcttcttaactt |
37209943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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