View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_40 (Length: 359)
Name: NF9879_low_40
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 21 - 354
Target Start/End: Complemental strand, 38523999 - 38523666
Alignment:
| Q |
21 |
ggtgtttcctccaagaatgctacaataatctcaattaaaagatacacttcggtgtctgctagtgctaccaggagtattgaagcgattagcatctcagaaa |
120 |
Q |
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| T |
38523999 |
ggtgtttcctccaagaatgctacaataatctcaattaaaagatacacttcggtgtctgctagtgctaccaggagtattgaagcgattagcatctcagaaa |
38523900 |
T |
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| Q |
121 |
cattcaacaatctgaagaaacaaggaaaagtgagtgtacnnnnnnnnnnnnnnnnnnnnnnnnggttccatgcaatgtatgtcacgttttctcttcaact |
220 |
Q |
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| T |
38523899 |
cattcaacaatctgaagaaacaaggaaaagtgagtgtacttatttattatatttttattttttggttccatgcaatgcatgtcacgttttctcttcaact |
38523800 |
T |
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| Q |
221 |
tgaatacttgtaccacatattgttttaattattccattttctatgcttttacaaatcaataacttttctttgcctggttataatatggattagtatttat |
320 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38523799 |
tgaatagttgtaccacatattgttttaattattccattttctatgcttttacaaatcaataacttttctttgcctggttataatatggattagtatttat |
38523700 |
T |
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| Q |
321 |
gtagcacaaacaccaaactcgacaccaacaccaa |
354 |
Q |
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|||||| |||||||| || |||||| ||||||| |
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| T |
38523699 |
gtagcaaaaacaccatacacgacactgacaccaa |
38523666 |
T |
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