View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_42 (Length: 357)
Name: NF9879_low_42
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 7855710 - 7855402
Alignment:
| Q |
17 |
agattctacctgtcatcaagaaggttcagaagaaatcgcattcaaacaagaattgctacacataatgtcttacatgcttatgtaaacaacatcaacggca |
116 |
Q |
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| T |
7855710 |
agattctacctgtcatcaagaaggttcagaagaaatcgcattcaaacaagaattgctacacataatgtcttacgtgc-------------atcaaccgca |
7855624 |
T |
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| Q |
117 |
tgaacgagattctagcgagtacaagaaatgttgaaacaaaccaatgacttcttgattgtaatctttcaaaaatcaaaattgatgaaggaatgaagtccaa |
216 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7855623 |
tgaacgagattttagcgagtacaagaaatgttgaaacaaaccaatgacttcttgattgtaatctttcaaaaatcaaaattgatgaaggaatgaagtccaa |
7855524 |
T |
|
| Q |
217 |
agctttaacatgttctatatgtttggcggatctcttggttggatcgatagcaattcagttgtcatgttcgcatttgtaccatgaaagagtgtgttgtaaa |
316 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7855523 |
agctttaacatgttctatatgtttggtggatctctcggttggatcgatagcaattcagttgtcatgttcgcatttgtaccatg-aagagtgtgttgtaaa |
7855425 |
T |
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| Q |
317 |
atggctagatagatcaaacacct |
339 |
Q |
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||||||||||||||||||||||| |
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| T |
7855424 |
atggctagatagatcaaacacct |
7855402 |
T |
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