View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_49 (Length: 338)
Name: NF9879_low_49
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 107 - 329
Target Start/End: Complemental strand, 2065123 - 2064901
Alignment:
| Q |
107 |
ttaatactctagaccttctcttcacaaaaacgtcgtcgttatggatactacatttacaccaccgtcaccacaccgttcatctccgttacaaaacataagc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2065123 |
ttaatactctagaccttctcttcacaaaaacgtcgtcgttatggatactacatttacaccaccgtcaccacaccgttcatctccgttacaaaacataagc |
2065024 |
T |
|
| Q |
207 |
cctagcattctcatcattataacaatcctcgccgtcaccgtcatcgtttctcttctaatctgcttcctcctccgccacctcaactgtcaccgtctccgcc |
306 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2065023 |
cctagcattctcatcattataacaatcctcgccgtcaccgtcatcgtttctcttctaatctgcttcctcctccgccacctcaactgtcaccgtctccgcc |
2064924 |
T |
|
| Q |
307 |
gtaatccatctccaacaaccacc |
329 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
2064923 |
gtaatccatctccaacaaccacc |
2064901 |
T |
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