View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_54 (Length: 324)
Name: NF9879_low_54
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 5942462 - 5942298
Alignment:
| Q |
1 |
ctttaatgaaaagctcagagtcatctacatccttacaactgagactgtgacatgatttatgttgatttaataaaaataagaaaaataaatataagttgag |
100 |
Q |
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| T |
5942462 |
ctttaattaaaagttcagagtcatctacatccttacaactgagactgtgacatgatttatgttgatttaataaaaataagaaaaataaatataagttgag |
5942363 |
T |
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| Q |
101 |
tttcaagacactaatatttatttttcttgnnnnnnngacaaatcgtcctaattggtcatgatctca |
166 |
Q |
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| T |
5942362 |
tttcaagacactaatatttatttttcttgtttttta-acaaatcgtcctaattggtcatgatctca |
5942298 |
T |
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Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 5942235 - 5942158
Alignment:
| Q |
179 |
tatcatatgatacacttctccaccttaaaagccacctcatttatgtatctcttttctatcaagaaacttcctgggata |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5942235 |
tatcatatgatacacttctccaccttaaaagccacctcatttatgtatctcttttctatcaagaaacttcctgggata |
5942158 |
T |
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