View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_56 (Length: 319)
Name: NF9879_low_56
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 2592016 - 2592305
Alignment:
| Q |
19 |
actagtaattataatcttccaccattgatagagaataatgtggaaaacagcatggtgccaattgatcaagtgcaatcttgtaatatggatgaggaaggag |
118 |
Q |
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| T |
2592016 |
actagtaattataatcttccaccattgatagagaataatgtggaaaacagcatggtgccaattgatcaagtgcaatcttgtaatatggatgaggaaggag |
2592115 |
T |
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| Q |
119 |
gagagttattaacattggagtcattgcaattgcaaagacaagaagagttgaatgaatgggtggaaactcaacaacaatgtcctagctttattttcagctg |
218 |
Q |
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| T |
2592116 |
gagagttattaacattggagtcattgcaattgcaaagacaagaagagttgaatgaatgggtggaaactcaacaacaatgtcctagctttattttcagctg |
2592215 |
T |
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| Q |
219 |
ggagagtgttgaaggacaaattggaggtgaagaacaagtactagtaccaaactcatcacatatgggaacacctaattcactttctccttt |
308 |
Q |
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| T |
2592216 |
ggagagtgttgaaggacaaattggaggtgaagaacaagtactagtaccaaactcatcacatatgggaacacctaattcactttctccttt |
2592305 |
T |
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