View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_low_58 (Length: 317)

Name: NF9879_low_58
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_low_58
NF9879_low_58
[»] chr8 (4 HSPs)
chr8 (15-277)||(29240853-29241120)
chr8 (15-261)||(16828396-16828651)
chr8 (274-317)||(36167773-36167816)
chr8 (277-317)||(41481775-41481815)
[»] chr3 (2 HSPs)
chr3 (275-317)||(44782522-44782564)
chr3 (276-317)||(54967209-54967250)
[»] chr7 (4 HSPs)
chr7 (277-317)||(4842648-4842688)
chr7 (276-316)||(25857130-25857170)
chr7 (277-317)||(4835575-4835615)
chr7 (277-317)||(24380123-24380163)
[»] chr5 (3 HSPs)
chr5 (277-317)||(33808173-33808213)
chr5 (277-317)||(33811827-33811867)
chr5 (277-317)||(33816745-33816785)
[»] scaffold0479 (1 HSPs)
scaffold0479 (276-317)||(2896-2937)
[»] scaffold0003 (1 HSPs)
scaffold0003 (277-317)||(342217-342257)
[»] chr6 (3 HSPs)
chr6 (277-317)||(22981670-22981710)
chr6 (277-317)||(23806698-23806738)
chr6 (277-317)||(31151926-31151966)
[»] chr4 (1 HSPs)
chr4 (277-317)||(9757212-9757252)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 277
Target Start/End: Original strand, 29240853 - 29241120
Alignment:
Q  15 aagttcttgtcctcgtttttacttactcttgtttgtgcgatcaatttggccttccctgttcatgcttttgcatattttgtgttacaaccaatgcagaaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29240853 aagttcttgtcctcgtttttacttactcttgtttgtgcgatcaatttggccttccctgttcatacttttgcatattttgtgttacaaccaatgcagaaat 29240952  T
Q  115 ccg-----aagtgcctctttatccagcaatttagggcaagctagcgagccaaattcagaggaggaagcagacggcaaacgaagaagagatgggtggggtt 209  Q
    |||     |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29240953 ccgggtttaagtgcctctttatccagcaatttagggcaagctagcgagcctaattcagaggaggaagcagacgacaaacgaagaagagatgggtggggtt 29241052  T
Q  210 ctaataaaaaagtgatttcgtagctgctccaaagactcatcctgtcagttctaaatgtagacgaatat 277  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  29241053 ctaataaaaaagtgatttcgtagctgatccaaagactcatcctgtcagttctaaacgtagacgaatat 29241120  T

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Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 15 - 261
Target Start/End: Original strand, 16828396 - 16828651
Alignment:
Q  15 aagttcttgtcctcgtttttacttactcttgtttgtgcga---tcaatttggccttccctgttcatgcttttgcatattttgtgttacaaccaatgcaga 111  Q
    |||||||||||||| ||||||||||| |||||||||||     ||||| ||||||||| ||||||| ||| |||||||||||||||||||||||||||||    
T  16828396 aagttcttgtcctcttttttacttacgcttgtttgtgcagctctcaatctggccttccttgttcatacttatgcatattttgtgttacaaccaatgcaga 16828495  T
Q  112 aatccg-----aagtgcctctttatccagcaatttagggcaagctagcgagccaaattcagaggaggaagcagacggcaaacgaagaagagatgggtggg 206  Q
    ||||||     ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || | | || ||||||||||||||||||    
T  16828496 aatccgggtttaagtgcctctttatccagcaaatcagggcaagctagcgagccaaattcagaggaggaagcggaagaccaaagaagaagagatgggtggg 16828595  T
Q  207 gttctaat-aaaaaagtgatttcgtagctgctccaaagactcatcctgtcagttct 261  Q
    |||||||| ||||||||||||||  ||||||||||||| |||||||||||||||||    
T  16828596 gttctaataaaaaaagtgatttctcagctgctccaaaggctcatcctgtcagttct 16828651  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 317
Target Start/End: Complemental strand, 36167816 - 36167773
Alignment:
Q  274 atatgttgggaaatgcctgcttaatttccctcctccgtgaactc 317  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  36167816 atatgttgggaaatgcctgcataatttccctcctccgtgaactc 36167773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 277 - 317
Target Start/End: Complemental strand, 41481815 - 41481775
Alignment:
Q  277 tgttgggaaatgcctgcttaatttccctcctccgtgaactc 317  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  41481815 tgttgggaaatgcctgcataatttccctcctccgtgaactc 41481775  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 275 - 317
Target Start/End: Original strand, 44782522 - 44782564
Alignment:
Q  275 tatgttgggaaatgcctgcttaatttccctcctccgtgaactc 317  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  44782522 tatgttgggaaatgcctgcataatttccctcctccgtgaactc 44782564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 54967209 - 54967250
Alignment:
Q  276 atgttgggaaatgcctgcttaatttccctcctccgtgaactc 317  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  54967209 atgttgggaaatgcctgcataatttccctcctccgtcaactc 54967250  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 4842648 - 4842688
Alignment:
Q  277 tgttgggaaatgcctgcttaatttccctcctccgtgaactc 317  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  4842648 tgttgggaaatgcctgcataatttccctcctccgtgaactc 4842688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 25857130 - 25857170
Alignment:
Q  276 atgttgggaaatgcctgcttaatttccctcctccgtgaact 316  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  25857130 atgttgggaaatgcctgcataatttccctcctccgtgaact 25857170  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 4835575 - 4835615
Alignment:
Q  277 tgttgggaaatgcctgcttaatttccctcctccgtgaactc 317  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  4835575 tgttgggaaatgcctgcataatttccctcctccatgaactc 4835615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 317
Target Start/End: Complemental strand, 24380163 - 24380123
Alignment:
Q  277 tgttgggaaatgcctgcttaatttccctcctccgtgaactc 317  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  24380163 tgttgggaaatgcctgcataatttccctcctctgtgaactc 24380123  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 277 - 317
Target Start/End: Complemental strand, 33808213 - 33808173
Alignment:
Q  277 tgttgggaaatgcctgcttaatttccctcctccgtgaactc 317  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  33808213 tgttgggaaatgcctgcataatttccctcctccgtgaactc 33808173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 277 - 317
Target Start/End: Complemental strand, 33811867 - 33811827
Alignment:
Q  277 tgttgggaaatgcctgcttaatttccctcctccgtgaactc 317  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  33811867 tgttgggaaatgcctgcataatttccctcctccgtgaactc 33811827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 277 - 317
Target Start/End: Complemental strand, 33816785 - 33816745
Alignment:
Q  277 tgttgggaaatgcctgcttaatttccctcctccgtgaactc 317  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  33816785 tgttgggaaatgcctgcataatttccctcctccgtgaactc 33816745  T

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Target: scaffold0479 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 2937 - 2896
Alignment:
Q  276 atgttgggaaatgcctgcttaatttccctcctccgtgaactc 317  Q
    |||||||||||||| ||| |||||||||| ||||||||||||    
T  2937 atgttgggaaatgcatgcataatttcccttctccgtgaactc 2896  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 342217 - 342257
Alignment:
Q  277 tgttgggaaatgcctgcttaatttccctcctccgtgaactc 317  Q
    |||||| |||||||||| |||||| ||||||||||||||||    
T  342217 tgttggaaaatgcctgcataattttcctcctccgtgaactc 342257  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 317
Target Start/End: Complemental strand, 22981710 - 22981670
Alignment:
Q  277 tgttgggaaatgcctgcttaatttccctcctccgtgaactc 317  Q
    |||||||||||| |||| ||||||||| |||||||||||||    
T  22981710 tgttgggaaatgactgcataatttcccccctccgtgaactc 22981670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 23806698 - 23806738
Alignment:
Q  277 tgttgggaaatgcctgcttaatttccctcctccgtgaactc 317  Q
    |||||||||||| |||| ||||||||| |||||||||||||    
T  23806698 tgttgggaaatgactgcataatttcccccctccgtgaactc 23806738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 31151926 - 31151966
Alignment:
Q  277 tgttgggaaatgcctgcttaatttccctcctccgtgaactc 317  Q
    ||||||||||||||||| ||||||||||||||  |||||||    
T  31151926 tgttgggaaatgcctgcataatttccctcctctctgaactc 31151966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 9757212 - 9757252
Alignment:
Q  277 tgttgggaaatgcctgcttaatttccctcctccgtgaactc 317  Q
    |||||| |||||||||| |||||||| ||||||||||||||    
T  9757212 tgttggtaaatgcctgcataatttccttcctccgtgaactc 9757252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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