View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_59 (Length: 313)
Name: NF9879_low_59
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 60 - 298
Target Start/End: Complemental strand, 17662644 - 17662406
Alignment:
| Q |
60 |
tagggtttgaaccttgttgtttctgaatttcagtatcatgat---attcatagttgtttttgggtttgtgatcaatagaatgatgaaaatggaaataggg |
156 |
Q |
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| T |
17662644 |
tagggtttgaaccttgtt---tctgaatttcagtaccatgatgatattcatagttgtttttgggtttgtgatcaatagaatgatgaaaatggaaataggg |
17662548 |
T |
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| Q |
157 |
tgaagaaaaagaactcatcatgatgatgttgtgatcgatgtagcagtggaattgaactgagaaaatagggtttgaagcaacaaagcgatggaaagcgtgg |
256 |
Q |
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| T |
17662547 |
tgaagaaaaagaactcatcatgatgatgttgtgatcgatgtagcagaggaattgaactgtgaaaatagggtttgaagcaacaaagcgatggaaagcgtgg |
17662448 |
T |
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| Q |
257 |
ttgtgaaacagcaaagagaacgcgcgaagtttataaattaat |
298 |
Q |
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| T |
17662447 |
atgtgaagcaggaaagagaacgcgcgaggtttataaagtaat |
17662406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 17701388 - 17701672
Alignment:
| Q |
1 |
catgatgttgtgagtgtttggctcaggagagtgtacnnnnnnnctatagggtttgaacttagggtttgaaccttgttgtttctgaatttcagtatcatga |
100 |
Q |
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| T |
17701388 |
catgatgttgtgagtgatttgctcaggagagtgtacagaaaaactatagggtttgaacttagggtttgaatcttggtgtttctcaatttcattaccatga |
17701487 |
T |
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| Q |
101 |
---tattcatagttgtttttgggtttgtgatcaatagaatgatgaaaatggaaatagggtgaagaaaaagaactcatcatgatgatgttgtgatcgatgt |
197 |
Q |
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| T |
17701488 |
tgatattcatagttgtttttgggtttgtgatcgattgaatgatgaaaatggaaatagggtgaagaaaaagaactcttca-----------tgatcgatgt |
17701576 |
T |
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| Q |
198 |
agcagtggaattgaactgagaaaatagggtttgaagcaacaaagcgatggaaagcgtggttgtgaaacagcaaagagaacgcgcgaagtttataaa |
293 |
Q |
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| T |
17701577 |
agcagtggaattgaactgagaaaatagggtttgaagaaacaaagcgatggaaagcgtggatgtgaagcaccaaacagatcgcgcgaggtttataaa |
17701672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 17662691 - 17662656
Alignment:
| Q |
1 |
catgatgttgtgagtgtttggctcaggagagtgtac |
36 |
Q |
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| T |
17662691 |
catgatgttgtgagtgtttggctcaggagagtgtac |
17662656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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