View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9879_low_6 (Length: 609)
Name: NF9879_low_6
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 11 - 592
Target Start/End: Complemental strand, 32388840 - 32388258
Alignment:
| Q |
11 |
tcttcttccaatcataattgaaaggaaggagataggaaaaggttgaataaagtttagaacttatattcaaaacnnnnnnnnn-ttgtttttgttgtcttt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
32388840 |
tcttcttccaatcataattgaaaggaaggaggtaggaaagggttgaataaagtttagaacttatattcaaaacaaaaaaaaaattgcttttgttgtcttt |
32388741 |
T |
|
| Q |
110 |
agaaagaaaacacaaaaaataaacatgactcgtggggctatcatagctttgatggtttgccttatggcaacagcagtgaggtctgaagatccttatgtgt |
209 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32388740 |
agaaaaaaaacacaaaaaataaacatgactcgtggggctatcatagctttgatggtttgccttatggcaacagcagtgaggtctgaagatccttatgtgt |
32388641 |
T |
|
| Q |
210 |
actatacatggaaggttacctatggtaacattgcacctttgggtactcctcaaaagggtattctcatcaacggtcaattcccgggacctgaaattaacgg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32388640 |
actatacatggaaggttacctatggtaacattgcacctttgggtactcctcaaaagggtattctcatcaacggtcaattcccgggacctgaaattaacgg |
32388541 |
T |
|
| Q |
310 |
taccagcaacaacaacattgttgttaatgttttcaacaaccttgatgagccactccttttcacatggagcggtattcaacaaaggaaaaactcgtgggcc |
409 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32388540 |
taccagcaacaacaacattgtagttaacgttttcaacaaccttgatgagccactccttttcacatggagcggtattcaacaaaggaaaaactcgtgggcc |
32388441 |
T |
|
| Q |
410 |
gatggaacaccgggagtccaatgtcctattgccccgggaaccaactacacctacaaattccaggttaaggatcaaattggtagttacttttactacccta |
509 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32388440 |
gatggaacatcgggagtccaatgtcctattgccccgggaaccaactacacctacaaattccaggttaaggatcaaattggtagttacttttactacccta |
32388341 |
T |
|
| Q |
510 |
ctaccggtctcatgagagctgccggtggtatcggtggaattagagtctacagccgattgttgatccctgtcccatatgctgat |
592 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32388340 |
ctaccggtctcatgagagctgccggtggtatcggtggaattagagtctacagccgattgttgatccctgtcccatatgctgat |
32388258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 6e-54; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 193 - 592
Target Start/End: Complemental strand, 37652347 - 37651948
Alignment:
| Q |
193 |
tgaagatccttatgtgtactatacatggaaggttacctatggtaacattgcacctttgggtactcctcaaaagggtattctcatcaacggtcaattcccg |
292 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||| |||| |||| | || || || || ||||||| || || |||||||||||||| |
|
|
| T |
37652347 |
tgaagatccttacatttactatacatggaaggttacctatggtaccatttcaccacttggaacaccccagcagggtatccttattaacggtcaattccca |
37652248 |
T |
|
| Q |
293 |
ggacctgaaattaacggtaccagcaacaacaacattgttgttaatgttttcaacaaccttgatgagccactccttttcacatggagcggtattcaacaaa |
392 |
Q |
| |
|
||||||||||| ||| | || ||||||||||| | ||||||||||| ||||||||||||||||| ||| | |||||||||||| |||| ||||||| | |
|
|
| T |
37652247 |
ggacctgaaatcaacagcactagcaacaacaatgtcgttgttaatgtattcaacaaccttgatgaaccattgcttttcacatggcacggtgttcaacaga |
37652148 |
T |
|
| Q |
393 |
ggaaaaactcgtgggccgatggaacaccgggagtccaatgtcctattgccccgggaaccaactacacctacaaattccaggttaaggatcaaattggtag |
492 |
Q |
| |
|
|||| || || ||| ||||| || | || || ||||| |||||| || ||||| ||||||||||||||||| || || |||||||||||||| || |
|
|
| T |
37652147 |
ggaagaattcatggcaagatggtacccttggtgttcaatgccctattcttcctggaactaactacacctacaaatttcaagtgaaggatcaaattggaag |
37652048 |
T |
|
| Q |
493 |
ttacttttactaccctactaccggtctcatgagagctgccggtggtatcggtggaattagagtctacagccgattgttgatccctgtcccatatgctgat |
592 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| | |||||| ||||||| ||||| ||| ||| || ||||||||||||| || ||||||||| |
|
|
| T |
37652047 |
ttacttttactaccctaccacaggtcttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtctgttgatccctgttccttatgctgat |
37651948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 193 - 592
Target Start/End: Complemental strand, 37635320 - 37634921
Alignment:
| Q |
193 |
tgaagatccttatgtgtactatacatggaaggttacctatggtaacattgcacctttgggtactcctcaaaagggtattctcatcaacggtcaattcccg |
292 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||| |||| |||| | || || || || ||||||| || || |||||||||||||| |
|
|
| T |
37635320 |
tgaagatccttacatttactatacatggaaggttacctatggtaccatttcaccacttggaacaccccagcagggtatccttattaacggtcaattccca |
37635221 |
T |
|
| Q |
293 |
ggacctgaaattaacggtaccagcaacaacaacattgttgttaatgttttcaacaaccttgatgagccactccttttcacatggagcggtattcaacaaa |
392 |
Q |
| |
|
||||||||||| ||| | || ||||| ||||| ||||||||||||| ||||||||||||||||| ||| | |||||||||||| |||| ||||||| | |
|
|
| T |
37635220 |
ggacctgaaatcaacagcactagcaataacaatgttgttgttaatgtattcaacaaccttgatgaaccattgcttttcacatggcacggtgttcaacaga |
37635121 |
T |
|
| Q |
393 |
ggaaaaactcgtgggccgatggaacaccgggagtccaatgtcctattgccccgggaaccaactacacctacaaattccaggttaaggatcaaattggtag |
492 |
Q |
| |
|
|||| || || ||| ||||| || | || || ||||| || ||| || || || ||||| |||||||||||||| || |||||||||||||| || |
|
|
| T |
37635120 |
ggaagaattcatggcaagatggtaccgctggtgttcaatgccccattcttcctgggactaactatacctacaaattccaagtgaaggatcaaattggaag |
37635021 |
T |
|
| Q |
493 |
ttacttttactaccctactaccggtctcatgagagctgccggtggtatcggtggaattagagtctacagccgattgttgatccctgtcccatatgctgat |
592 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| | |||||| ||||||| ||||| ||| ||| || ||||||||||||| || ||||||||| |
|
|
| T |
37635020 |
ttacttttactaccctaccacaggtcttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtctgttgatccctgttccttatgctgat |
37634921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 193 - 592
Target Start/End: Complemental strand, 37638234 - 37637835
Alignment:
| Q |
193 |
tgaagatccttatgtgtactatacatggaaggttacctatggtaacattgcacctttgggtactcctcaaaagggtattctcatcaacggtcaattcccg |
292 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||| |||| |||| | || || || || ||||||| || || |||||||||||||| |
|
|
| T |
37638234 |
tgaagatccttacatttactatacatggaaggttacctatggtaccatttcaccacttggaacaccccagcagggtatccttattaacggtcaattccca |
37638135 |
T |
|
| Q |
293 |
ggacctgaaattaacggtaccagcaacaacaacattgttgttaatgttttcaacaaccttgatgagccactccttttcacatggagcggtattcaacaaa |
392 |
Q |
| |
|
||||||||||| ||| | || ||||| ||||| ||||||||||||| ||||||||||||||||| ||| | |||||||||||| |||| ||||||| | |
|
|
| T |
37638134 |
ggacctgaaatcaacagcactagcaataacaatgttgttgttaatgtattcaacaaccttgatgaaccattgcttttcacatggcacggtgttcaacaga |
37638035 |
T |
|
| Q |
393 |
ggaaaaactcgtgggccgatggaacaccgggagtccaatgtcctattgccccgggaaccaactacacctacaaattccaggttaaggatcaaattggtag |
492 |
Q |
| |
|
|||| || || ||| ||||| || | || || ||||| || ||| || || || ||||| |||||||||||||| || |||||||||||||| || |
|
|
| T |
37638034 |
ggaagaattcatggcaagatggtaccgctggtgttcaatgccccattcttcctgggactaactatacctacaaattccaagtgaaggatcaaattggaag |
37637935 |
T |
|
| Q |
493 |
ttacttttactaccctactaccggtctcatgagagctgccggtggtatcggtggaattagagtctacagccgattgttgatccctgtcccatatgctgat |
592 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| | |||||| ||||||| ||||| ||| ||| || ||||||||||||| || ||||||||| |
|
|
| T |
37637934 |
ttacttttactaccctaccacaggtcttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtctgttgatccctgttccttatgctgat |
37637835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 193 - 592
Target Start/End: Complemental strand, 37646522 - 37646123
Alignment:
| Q |
193 |
tgaagatccttatgtgtactatacatggaaggttacctatggtaacattgcacctttgggtactcctcaaaagggtattctcatcaacggtcaattcccg |
292 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||| |||| |||| | || || || || ||||||| || || |||||||||||||| |
|
|
| T |
37646522 |
tgaagatccttacatttactatacatggaaggttacctatggtaccatttcaccacttggaacaccccagcagggtatccttattaacggtcaattccca |
37646423 |
T |
|
| Q |
293 |
ggacctgaaattaacggtaccagcaacaacaacattgttgttaatgttttcaacaaccttgatgagccactccttttcacatggagcggtattcaacaaa |
392 |
Q |
| |
|
||||||||||| ||| | || ||||| ||||| ||||||||||||| ||||||||||||||||| ||| | |||||||||||| |||| ||||||| | |
|
|
| T |
37646422 |
ggacctgaaatcaacagcactagcaataacaatgttgttgttaatgtattcaacaaccttgatgaaccattgcttttcacatggcacggtgttcaacaga |
37646323 |
T |
|
| Q |
393 |
ggaaaaactcgtgggccgatggaacaccgggagtccaatgtcctattgccccgggaaccaactacacctacaaattccaggttaaggatcaaattggtag |
492 |
Q |
| |
|
|||| || || ||| ||||| || | || || ||||| || ||| || || || ||||| |||||||||||||| || |||||||||||||| || |
|
|
| T |
37646322 |
ggaagaattcatggcaagatggtaccgctggtgttcaatgccccattcttcctgggactaactatacctacaaattccaagtgaaggatcaaattggaag |
37646223 |
T |
|
| Q |
493 |
ttacttttactaccctactaccggtctcatgagagctgccggtggtatcggtggaattagagtctacagccgattgttgatccctgtcccatatgctgat |
592 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| | |||||| ||||||| ||||| ||| ||| || ||||||||||||| || ||||||||| |
|
|
| T |
37646222 |
ttacttttactaccctaccacaggtcttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtctgttgatccctgttccttatgctgat |
37646123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 193 - 592
Target Start/End: Complemental strand, 37649435 - 37649036
Alignment:
| Q |
193 |
tgaagatccttatgtgtactatacatggaaggttacctatggtaacattgcacctttgggtactcctcaaaagggtattctcatcaacggtcaattcccg |
292 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||| |||| |||| | || || || || ||||||| || || |||||||||||||| |
|
|
| T |
37649435 |
tgaagatccttacatttactatacatggaaggttacctatggtaccatttcaccacttggaacaccccagcagggtatccttattaacggtcaattccca |
37649336 |
T |
|
| Q |
293 |
ggacctgaaattaacggtaccagcaacaacaacattgttgttaatgttttcaacaaccttgatgagccactccttttcacatggagcggtattcaacaaa |
392 |
Q |
| |
|
||||||||||| ||| | || ||||| ||||| ||||||||||||| ||||||||||||||||| ||| | |||||||||||| |||| ||||||| | |
|
|
| T |
37649335 |
ggacctgaaatcaacagcactagcaataacaatgttgttgttaatgtattcaacaaccttgatgaaccattgcttttcacatggcacggtgttcaacaga |
37649236 |
T |
|
| Q |
393 |
ggaaaaactcgtgggccgatggaacaccgggagtccaatgtcctattgccccgggaaccaactacacctacaaattccaggttaaggatcaaattggtag |
492 |
Q |
| |
|
|||| || || ||| ||||| || | || || ||||| || ||| || || || ||||| |||||||||||||| || |||||||||||||| || |
|
|
| T |
37649235 |
ggaagaattcatggcaagatggtaccgctggtgttcaatgccccattcttcctgggactaactatacctacaaattccaagtgaaggatcaaattggaag |
37649136 |
T |
|
| Q |
493 |
ttacttttactaccctactaccggtctcatgagagctgccggtggtatcggtggaattagagtctacagccgattgttgatccctgtcccatatgctgat |
592 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| | |||||| ||||||| ||||| ||| ||| || ||||||||||||| || ||||||||| |
|
|
| T |
37649135 |
ttacttttactaccctaccacaggtcttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtctgttgatccctgttccttatgctgat |
37649036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 281 - 592
Target Start/End: Complemental strand, 37641060 - 37640749
Alignment:
| Q |
281 |
ggtcaattcccgggacctgaaattaacggtaccagcaacaacaacattgttgttaatgttttcaacaaccttgatgagccactccttttcacatggagcg |
380 |
Q |
| |
|
||||||||||| ||||||||||| ||| | || ||||| ||||| |||||| |||||| ||||||||||||||||| ||| | |||||||||||| || |
|
|
| T |
37641060 |
ggtcaattcccaggacctgaaatcaacagcactagcaataacaatgttgttgctaatgtattcaacaaccttgatgaaccattgcttttcacatggcacg |
37640961 |
T |
|
| Q |
381 |
gtattcaacaaaggaaaaactcgtgggccgatggaacaccgggagtccaatgtcctattgccccgggaaccaactacacctacaaattccaggttaagga |
480 |
Q |
| |
|
|| ||||||| ||||| || || ||| ||||| || || || || ||||| || ||| || || || ||||| |||||||||||||| || ||||| |
|
|
| T |
37640960 |
gtgttcaacagaggaagaattcatggcaagatggtacccctggtgttcaatgccccattcttcctgggactaactatacctacaaattccaagtgaagga |
37640861 |
T |
|
| Q |
481 |
tcaaattggtagttacttttactaccctactaccggtctcatgagagctgccggtggtatcggtggaattagagtctacagccgattgttgatccctgtc |
580 |
Q |
| |
|
||||||||| |||||||||||||||||||| || ||||| ||||| | |||||| ||||||| ||||| ||| ||| || ||||||||||||| |
|
|
| T |
37640860 |
tcaaattggaagttacttttactaccctaccacaggtcttcaaagagccgttggtggtttcggtggtcttagaatcttcagtcgtctgttgatccctgtt |
37640761 |
T |
|
| Q |
581 |
ccatatgctgat |
592 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
37640760 |
ccttatgctgat |
37640749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 37643609 - 37643556
Alignment:
| Q |
193 |
tgaagatccttatgtgtactatacatggaaggttacctatggtaacattgcacc |
246 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
37643609 |
tgaagatccttacatttactatacatggaaggttacctatggtaccatttcacc |
37643556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University