View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_61 (Length: 311)
Name: NF9879_low_61
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_61 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 23 - 293
Target Start/End: Original strand, 29729118 - 29729388
Alignment:
| Q |
23 |
tggagaaggtcaccaaaatgacatatgctcaagtagccatctatggtttcagcgaaaaagttggcctcctctctttccctcaaagagaggactcttctga |
122 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29729118 |
tggagaaagtcaccaaaatgacatatgctcaagtagccatctatggtttcagcgaaaaagttggcctcctctctttccctcaaagagaggactcttctga |
29729217 |
T |
|
| Q |
123 |
gacgtccaaaccatacagcagtaaaactggtgcaatcatcgataatgaagtacgagaatgggtgaacaaagcatacaaacataccattcaacttatagaa |
222 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29729218 |
gacgtccaaaccatacagcagtaaaactggtgcaatcatcgataatgaagtacgagaatgggtgaacaaagcatacaaacataccattcaacttatagaa |
29729317 |
T |
|
| Q |
223 |
gaacgcaagggaaaagtagctgaaattgcagagttactgctcgaaaaagaagtacttcaccaagatgactt |
293 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29729318 |
gaacgcaagggaaaagtagctgaaattgcagagttactgctcgaaaaagaagtacttcaccaagatgactt |
29729388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 38513306 - 38513030
Alignment:
| Q |
17 |
atgatttggagaaggtcaccaaaatgacatatgctcaagtagccatctatggtttcagcgaaaaagttggcctcctctctttccctcaaagagaggactc |
116 |
Q |
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|||| |||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
38513306 |
atgacttggagaaagtcaccaagatgacatatgctcaagtagccgtctatggtttcagcgaaaaagtgggcctcctctctttccctcaaaaagaggactc |
38513207 |
T |
|
| Q |
117 |
ttctgagacgtccaaaccatacagcagtaaaactggtgcaatcatcgataatgaagtacgagaatgggtgaacaaagcatacaaacataccattcaactt |
216 |
Q |
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| |||| ||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||| |||||||||| ||| ||| | || ||| |
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| T |
38513206 |
gttagagatgtctaaaccatacagcaacaaaactggtgcaatcattgataatgaagtgcgagaatgggtggacaaagcatatgaacgtactgtgcagctt |
38513107 |
T |
|
| Q |
217 |
atagaagaacgcaagggaaaagtagctgaaattgcagagttactgctcgaaaaagaagtacttcaccaagatgactt |
293 |
Q |
| |
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||||| ||| |||| ||||||||| || |||||||||| || || ||||||||||| ||||||||||||||||| |
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| T |
38513106 |
atagagaaacagaaggagaaagtagctcaacttgcagagttgcttcttgaaaaagaagttcttcaccaagatgactt |
38513030 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 45285401 - 45285677
Alignment:
| Q |
17 |
atgatttggagaaggtcaccaaaatgacatatgctcaagtagccatctatggtttcagcgaaaaagttggcctcctctctttccctcaaagagaggactc |
116 |
Q |
| |
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|||| |||||||| |||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
45285401 |
atgacttggagaaagtcaccaagatgatatatgctcaagtagctgtctatggtttcagcgaaaaagttggcctcctctctttccctccaagtgaggactc |
45285500 |
T |
|
| Q |
117 |
ttctgagacgtccaaaccatacagcagtaaaactggtgcaatcatcgataatgaagtacgagaatgggtgaacaaagcatacaaacataccattcaactt |
216 |
Q |
| |
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|| |||||||||||||||||||||||| |||||| |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| || ||| |
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| T |
45285501 |
ttttgagacgtccaaaccatacagcagcaaaactagtgcaatcattgataatgaagtgcgagatagggtgaacaaagcatacaaacataccatacagctt |
45285600 |
T |
|
| Q |
217 |
atagaagaacgcaagggaaaagtagctgaaattgcagagttactgctcgaaaaagaagtacttcaccaagatgactt |
293 |
Q |
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||||| ||| |||||| ||| | |||||||||||| || | |||||||||||||||||||||||||||||||||| |
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| T |
45285601 |
atagaggaatacaaggggaaattggctgaaattgcaaagctgttgctcgaaaaagaagtacttcaccaagatgactt |
45285677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 3636 - 3915
Alignment:
| Q |
17 |
atgatttggagaaggtcaccaaaatgacatatgctcaagtagccatctatggtttcagcgaaaaagttggcctcctctctttccctcaa---agagagga |
113 |
Q |
| |
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|||| |||||||| |||||||| ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||| | |||||| |
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| T |
3636 |
atgacttggagaaagtcaccaagatgacatatgctcaagtagccgtctatggttttagcgaacaagttggcctcctctctttccctcatcataaagagga |
3735 |
T |
|
| Q |
114 |
ctcttctgagacgtccaaaccatacagcagtaaaactggtgcaatcatcgataatgaagtacgagaatgggtgaacaaagcatacaaacataccattcaa |
213 |
Q |
| |
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|| | ||||| |||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| || ||| |
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| T |
3736 |
ttcgtttgagatgtccaaaccatacagcagcgaaactggtgcaatcattgataaggaagtacgagaatgggtgaacaaagcattcaaacatactatacaa |
3835 |
T |
|
| Q |
214 |
cttatagaagaacgcaagggaaaagtagctgaaattgcagagttactgctcgaaaaagaagtacttcaccaagatgactt |
293 |
Q |
| |
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|| ||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| |
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| T |
3836 |
ctaatagaggaacacaagggaaaagtagctgaaattgcagagttgctgctcgaaaaagaagtactataccaagacgactt |
3915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 124 - 293
Target Start/End: Original strand, 16849847 - 16850016
Alignment:
| Q |
124 |
acgtccaaaccatacagcagtaaaactggtgcaatcatcgataatgaagtacgagaatgggtgaacaaagcatacaaacataccattcaacttatagaag |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16849847 |
acgtccaaaccatacagcagtaaaactggtgcaatcatcgataatgaagtacgagaatgggtgaacaaagcatacaaacataccattcaacttatagaag |
16849946 |
T |
|
| Q |
224 |
aacgcaagggaaaagtagctgaaattgcagagttactgctcgaaaaagaagtacttcaccaagatgactt |
293 |
Q |
| |
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||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
16849947 |
aacacaagggaaaagtagctgaaattgcagagttattgctcgaaaaagaagtacttcaccaagatgactt |
16850016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 16838581 - 16838698
Alignment:
| Q |
11 |
cacagaatgatttggagaaggtcaccaaaatgacatatgctcaagtagccatctatggtttcagcgaaaaagttggcctcctctctttccctcaaagaga |
110 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16838581 |
cacaaaatgacttggagaaagtcaccaaaatgacatatgctcaagtatccatctatggtttcagcgaaaaagttggcctcctctctttccctcaaagaga |
16838680 |
T |
|
| Q |
111 |
ggactcttctgagacgtc |
128 |
Q |
| |
|
|||||||||||||||||| |
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| T |
16838681 |
ggactcttctgagacgtc |
16838698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 6 - 290
Target Start/End: Complemental strand, 20477836 - 20477552
Alignment:
| Q |
6 |
aggatcacagaatgatttggagaaggtcaccaaaatgacatatgctcaagtagccatctatggtttcagcgaaaaagttggcctcctctctttccctcaa |
105 |
Q |
| |
|
|||| |||| ||||| |||||||| |||||||| |||||||||||||||||| || | |||||||||||||||||||||||||| |||||||||||| | |
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|
| T |
20477836 |
aggagcacaaaatgacttggagaaagtcaccaagatgacatatgctcaagtaaccgtatatggtttcagcgaaaaagttggccttctctctttcccttca |
20477737 |
T |
|
| Q |
106 |
agagaggactcttctgagacgtccaaaccatacagcagtaaaactggtgcaatcatcgataatgaagtacgagaatgggtgaacaaagcatacaaacata |
205 |
Q |
| |
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| |||||||||| |||||||||||||||||||||||| ||||| |||| ||||| ||||| ||||| ||||| |||||||| |||||||||||||||| |
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| T |
20477736 |
attgaggactcttttgagacgtccaaaccatacagcagcgaaactagtgcgatcattgataacgaagtgcgagattgggtgaagaaagcatacaaacata |
20477637 |
T |
|
| Q |
206 |
ccattcaacttatagaagaacgcaagggaaaagtagctgaaattgcagagttactgctcgaaaaagaagtacttcaccaagatga |
290 |
Q |
| |
|
|||| | |||||||| ||| |||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
20477636 |
ccatagagcttatagaggaatacaaggggaaagtagctgaagttgcagagttgctgctcgaaaaagaagtacttcaccaagatga |
20477552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 24005440 - 24005716
Alignment:
| Q |
11 |
cacagaatgatttggagaaggtcaccaaaatgacatatgctcaagtagccatctatggtttcagcgaaaaagttggcctcctctctttccctcaaagaga |
110 |
Q |
| |
|
|||| ||||| |||||||| || ||||| ||||||||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||| || |
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| T |
24005440 |
cacaaaatgacttggagaaagtaaccaagatgacatatgcccaagtagccatctatggtttcagtgaaaaagtgggtctcctctctttccctcaaaatga |
24005539 |
T |
|
| Q |
111 |
ggactcttctgagacgtccaaaccatacagcagtaaaactggtgcaatcatcgataatgaagtacgagaatgggtgaacaaagcatacaaacataccatt |
210 |
Q |
| |
|
||| | || | ||||||||||| | | |||||| ||||| ||| | ||||| ||||| ||||||||| | ||||| ||| |||| | |
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| T |
24005540 |
ggatcagtttggg------aaaccatacagtggcgatactggtaacatcattgatcaggaagtgcgagattgggtgaaccatgcatatgaacgtaccgta |
24005633 |
T |
|
| Q |
211 |
caacttatagaagaacgcaagggaaaagtagctgaaattgcagagttactgctcgaaaaagaagtacttcaccaagatgactt |
293 |
Q |
| |
|
|| ||||||||||||| ||||| ||| ||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| |
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|
| T |
24005634 |
cagcttatagaagaacacaaggagaaactagctcaaattgcagagttacttctcgaaaaagaagtacttcaccaagaggactt |
24005716 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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