View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_63 (Length: 304)
Name: NF9879_low_63
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 38188789 - 38188512
Alignment:
| Q |
20 |
tgtaggtatatcaatatggtttctttcaattatatacctcatttccggtgtaccaggagcctatgtgatgtggtatcgccctctatatcgtgctacgagg |
119 |
Q |
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| T |
38188789 |
tgtaggtatatcaatatggtttctttcaattatatacctcatttccggtgtaccaggagcctatgtgatgtggtatcgccctctatatcgtgctacgagg |
38188690 |
T |
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| Q |
120 |
tagttagtttacagtctgattgaatccaattttactggtttgtcatgttttgttctataattctatgtcatctcctgttacaggacggacagtgctctaa |
219 |
Q |
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| T |
38188689 |
tagttagtttacagtctgattgaatccaattttactggtttgtcatgttttgttctataattctatgtcatctcctgttacaggacggacagtgctctaa |
38188590 |
T |
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| Q |
220 |
aatttggctggtttttcttatgctactcggcaagttttctatttatttttcatagaagtaaccattcattctctgctt |
297 |
Q |
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| T |
38188589 |
aatttggctggtttttcttatgctactcggcaagttttatatttatttttcatagaagtaaccattcattctgtgctt |
38188512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 16184214 - 16184128
Alignment:
| Q |
36 |
tggtttctttcaattatatacctcatttccggtgtaccaggagcctatgtgatgtggtatcgccctctatatcgtgctacgaggtag |
122 |
Q |
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| T |
16184214 |
tggtttcttgctattatatattttatttctggtgttccagcatcctatgtgatgtggtatcgccctctttatcgcgctatgaggtag |
16184128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 16183565 - 16183527
Alignment:
| Q |
197 |
ttacaggacggacagtgctctaaaatttggctggttttt |
235 |
Q |
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| T |
16183565 |
ttacaggacggacagtgctctgaagtttggctggttttt |
16183527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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