View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_64 (Length: 303)
Name: NF9879_low_64
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 31829694 - 31829426
Alignment:
| Q |
1 |
cgtttagttgattacatttcctcaaagtatgaccgtttatgtatcaatgtaccatcctgtccaatgtttgtgtcggcgcttcaataaataaataaacaaa |
100 |
Q |
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||||||||| |||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31829694 |
cgtttagttaattacagttcctcaaagtattaccgtttacgtatcaatgtaccatcctgtccaatgtttgtgtcggcgcttcaataaataaataaacaaa |
31829595 |
T |
|
| Q |
101 |
gtgaaaagaaaggttttgctatttagtgaaacttgcctgagcatacaaatgctcgtcaaacatacgaacagcacaaggccctgacgtggaagccgcctgt |
200 |
Q |
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|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31829594 |
gtgaaaagaa---------------------cttgcctgagcatacaaatgctcgtcaaacatacgaacagcacaaggccctgacgtggaagctgcctgt |
31829516 |
T |
|
| Q |
201 |
ctaggttgttagatcataacctggtctaggggcttcaaagcttcaaatcacatgatactctacacggttctcctttgggttaatctctgc |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31829515 |
ctaggttgttagatcataacctggtctaggggcttcaatgcttcaaatcacatgatactctacacggttctcctttgggttaatctctgc |
31829426 |
T |
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