View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_65 (Length: 298)
Name: NF9879_low_65
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_65 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 27 - 280
Target Start/End: Complemental strand, 2789599 - 2789344
Alignment:
| Q |
27 |
tttcataagctcgcttatataaacaatttataaagagcttgtgcagattttgcatcgataaactcctcgatggtacnnnnnnncgtatacataagctctt |
126 |
Q |
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| T |
2789599 |
tttcgtaagctcgcttatataaacaatttataaagagctcatgcagattttgcatcgataaactcctcgatggtacaaaaaaacgtatacataagctctt |
2789500 |
T |
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| Q |
127 |
atatgataaacacttactgaataagtgtccaaataccctatgaaacatgactgaaagtctgaaacagtaagcttgcctggtcaagagacggagaacaaat |
226 |
Q |
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| T |
2789499 |
atatgataaacacttactgaataagtgtccaaataccctatgaaacatgactgaaagtctgaaacagtaagcttgcctggtcaagagacgaagaacaaat |
2789400 |
T |
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| Q |
227 |
gtatcgatgaatttc--acagagcttcaaatgcattgacttctttatgtccactgt |
280 |
Q |
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| T |
2789399 |
gtatcgatgaatttcagacagagcttcaaatgcattgatttctttatgtccactgt |
2789344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 110 - 273
Target Start/End: Original strand, 2416974 - 2417127
Alignment:
| Q |
110 |
cgtatacataagctcttatatgataaacacttactgaataagtgtccaaataccctatgaaacatgactgaaagtctgaaacagtaagcttgcctggtca |
209 |
Q |
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| T |
2416974 |
cgtatacataagctcttatatgataaacacttac-gaaaaagtgtccaaataccctatgaaacatga--------ctgaaacggtaaacttgcctggtca |
2417064 |
T |
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| Q |
210 |
agagacggagaacaaatgtatcgatgaatttc--acagagcttcaaatgcattgacttctttatgt |
273 |
Q |
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| T |
2417065 |
agagacggag---aaatatatcggtgaatctcagacagagcttcaactgcactgacttctttatgt |
2417127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 4244015 - 4243956
Alignment:
| Q |
202 |
cctggtcaagagacggagaacaaatgtatcgatgaatttc--acagagcttcaaatgcat |
259 |
Q |
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| T |
4244015 |
cctggtcaagagacggggaacaaatgtatcgatgaatctctgacagagcttcaaatgcat |
4243956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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