View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9879_low_66 (Length: 298)
Name: NF9879_low_66
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_66 |
 |  |
|
| [»] scaffold0045 (2 HSPs) |
 |  |  |
|
Alignment Details
Target: chr6 (Bit Score: 151; Significance: 6e-80; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 38 - 284
Target Start/End: Original strand, 6626200 - 6626435
Alignment:
| Q |
38 |
cttatttcaattttaattaccaattatgacagtttcattgcatataaaacattaccaagaatttatcctcgtaagcttagctcaattgatagggacaatg |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||| ||| |||||| |
|
|
| T |
6626200 |
cttatttcaattttaattaccaattatgacagtttcattgcatataaaacattaccaaga---------cg--agcttaactcaattgacaggaacaatg |
6626288 |
T |
 |
| Q |
138 |
tatattatatacaaaattttgggttcaaactccggctaccaccnnnnnnntattaccaagaattgatattgatccataaattagttaaaaatctcaaaca |
237 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6626289 |
catattatatacaaaatttcggattcaaactccggctaccacaaaaaaaataataccaagaattgatattgatccataaattagttaaaaatctcaaaca |
6626388 |
T |
 |
| Q |
238 |
atataaattagttaaaacattttccttttctgattcaattttgtgat |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6626389 |
atataaattagttaaaacattttccttttctgattcaattttgtgat |
6626435 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 6626600 - 6626660
Alignment:
| Q |
224 |
aaaaatctcaaacaatataaattagttaaaacattttccttttctgattcaattttgtgat |
284 |
Q |
| |
|
||||| ||||||| ||||||||||||| |||||||| | |||||| ||||| ||||||||| |
|
|
| T |
6626600 |
aaaaaactcaaacgatataaattagttcaaacatttcctttttctcattcatttttgtgat |
6626660 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 6626517 - 6626551
Alignment:
| Q |
204 |
tattgatccataaattagttaaaaatctcaaacaa |
238 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6626517 |
tattgatccataaattagttagaaatctcaaacaa |
6626551 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 7470803 - 7470758
Alignment:
| Q |
101 |
tatcctcgtaagcttagctcaattgatagggacaatgtatattata |
146 |
Q |
| |
|
||||||||||||||||||||| ||| |||||| |||| |||||||| |
|
|
| T |
7470803 |
tatcctcgtaagcttagctcagttggtagggataatgcatattata |
7470758 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 17382074 - 17382123
Alignment:
| Q |
98 |
atttatcctcgtaagcttagctcaattgatagggacaatgtatattatat |
147 |
Q |
| |
|
|||||||||||| ||||||||||| ||| || |||||||||||| ||||| |
|
|
| T |
17382074 |
atttatcctcgtgagcttagctcagttggtatggacaatgtataatatat |
17382123 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 29283806 - 29283878
Alignment:
| Q |
99 |
tttatcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaactccg |
171 |
Q |
| |
|
||||| |||||||||||| |||| ||| ||| ||||||||||| ||||| ||| | | |||||||||||||| |
|
|
| T |
29283806 |
tttatgctcgtaagcttaactcagttggtagagacaatgtataatatatgcaaggtctagggttcaaactccg |
29283878 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 51031873 - 51031934
Alignment:
| Q |
106 |
tcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaac |
167 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||| |||||||||||||||| | |||||||||| |
|
|
| T |
51031873 |
tcgtaaacttagctcaattgatagtgacaatgcatattatatacaaaatctagggttcaaac |
51031934 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 17669655 - 17669716
Alignment:
| Q |
118 |
ctcaattgatagggacaatgtatattatatacaaaattttgggttcaaactccggctaccac |
179 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||| || |||||||||||||||| ||||| |
|
|
| T |
17669655 |
ctcagttgatagggacaatgtataatatatgcaaggttcggggttcaaactccggccaccac |
17669716 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 8797132 - 8797084
Alignment:
| Q |
198 |
aattgatattgatccataaattagttaaaaatctcaaacaatataaatt |
246 |
Q |
| |
|
|||| |||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
8797132 |
aatttatattgatcccaaaattggttaaaaacctcaaacaatataaatt |
8797084 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 16033516 - 16033440
Alignment:
| Q |
103 |
tcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaactccggctaccac |
179 |
Q |
| |
|
||||||| ||||| |||| ||||||||||||||| ||| ||||| ||| | | |||||||||||||||| ||||| |
|
|
| T |
16033516 |
tcctcgtgagcttgactcagttgatagggacaatgcataatatatgcaaggtctggggttcaaactccggccaccac |
16033440 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 24506981 - 24506941
Alignment:
| Q |
101 |
tatcctcgtaagcttagctcaattgatagggacaatgtata |
141 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
24506981 |
tatcctcgtaagcttagctcagttgatatagacaatgtata |
24506941 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 11949734 - 11949665
Alignment:
| Q |
98 |
atttatcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaac |
167 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| | ||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
11949734 |
atttatcctcgtgagcttagctcagttgataagaacaatacataatatatacaaaattcggggttcaaac |
11949665 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 27372382 - 27372425
Alignment:
| Q |
103 |
tcctcgtaagcttagctcaattgatagggacaatgtatattata |
146 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| |||||||| |
|
|
| T |
27372382 |
tcctcgtaagcttagctcaattggtcgggacaatgcatattata |
27372425 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 39093630 - 39093565
Alignment:
| Q |
114 |
ttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaactccggctaccac |
179 |
Q |
| |
|
|||||||||||| || |||||||| ||| ||||| |||| ||| |||||||||| ||| ||||||| |
|
|
| T |
39093630 |
ttagctcaattggtaaggacaatgcataatatatgcaaagtttagggttcaaaccccgactaccac |
39093565 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 63857 - 63921
Alignment:
| Q |
103 |
tcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaac |
167 |
Q |
| |
|
||||||| || |||||||| ||| ||||||||||||||| |||||||||| ||| ||||||||| |
|
|
| T |
63857 |
tcctcgtgagtttagctcagttggtagggacaatgtataatatatacaaagtttgaggttcaaac |
63921 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 71189 - 71253
Alignment:
| Q |
103 |
tcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaac |
167 |
Q |
| |
|
||||||| || |||||||| ||| ||||||||||||||| |||||||||| ||| ||||||||| |
|
|
| T |
71189 |
tcctcgtgagtttagctcagttggtagggacaatgtataatatatacaaagtttgaggttcaaac |
71253 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 42200728 - 42200684
Alignment:
| Q |
103 |
tcctcgtaagcttagctcaattgatagggacaatgtatattatat |
147 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
42200728 |
tcctcgtgagcttagctcagttgatagggacaatgtataatatat |
42200684 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 35061631 - 35061706
Alignment:
| Q |
103 |
tcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaactccggctacca |
178 |
Q |
| |
|
||||||| ||||||| ||||||||||| |||||| ||| ||||||||| |||| ||||||||| ||||| |||| |
|
|
| T |
35061631 |
tcctcgtgagcttagttcaattgatagagacaatacataatatatacaacatttgaggttcaaaccccggccacca |
35061706 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 8137930 - 8137994
Alignment:
| Q |
103 |
tcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaac |
167 |
Q |
| |
|
||||||||||||||||||| ||| || |||||||| ||| |||| |||| ||| |||||||||| |
|
|
| T |
8137930 |
tcctcgtaagcttagctcagttggtatggacaatgcataaaatatgcaaagtttggggttcaaac |
8137994 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 17883882 - 17883958
Alignment:
| Q |
102 |
atcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaactccggctacca |
178 |
Q |
| |
|
|||||||| | ||||||||| |||||| ||| |||||||| ||||| ||| | |||||||||||||||||| |||| |
|
|
| T |
17883882 |
atcctcgtgaccttagctcacttgatatggataatgtataatatatgcaaggtcttgggttcaaactccggccacca |
17883958 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 5526720 - 5526784
Alignment:
| Q |
103 |
tcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaac |
167 |
Q |
| |
|
||||||| ||||||||||| ||| || |||||||| ||| |||||| || |||| |||||||||| |
|
|
| T |
5526720 |
tcctcgtgagcttagctcagttggtatggacaatgcataatatatataagatttggggttcaaac |
5526784 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 42753485 - 42753445
Alignment:
| Q |
111 |
agcttagctcaattgatagggacaatgtatattatatacaa |
151 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| ||||||||| |
|
|
| T |
42753485 |
agcttaactcaattggtagggacaatgtataatatatacaa |
42753445 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 49172353 - 49172317
Alignment:
| Q |
101 |
tatcctcgtaagcttagctcaattgatagggacaatg |
137 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
49172353 |
tatcctcgtgagcttagctcagttgatagggacaatg |
49172317 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 20175720 - 20175796
Alignment:
| Q |
103 |
tcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaactccggctaccac |
179 |
Q |
| |
|
||||||| ||||||||||| ||| || |||||||||||| ||||||||| ||| | |||| ||||||||| ||||| |
|
|
| T |
20175720 |
tcctcgtgagcttagctcagttggtatggacaatgtataatatatacaagattcagagttcgaactccggccaccac |
20175796 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 28344549 - 28344613
Alignment:
| Q |
103 |
tcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaac |
167 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||||||||| ||||| ||| ||| |||||||||| |
|
|
| T |
28344549 |
tcctcgtaagcttagttcagttgaaagggacaatgtataatatatgcaaggtttggggttcaaac |
28344613 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 6489002 - 6489079
Alignment:
| Q |
103 |
tcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaactccggctaccacc |
180 |
Q |
| |
|
||||||| ||||||||||| ||| ||||||||||| ||| ||||| ||| | | |||||||||| ||||| |||||| |
|
|
| T |
6489002 |
tcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtctggggttcaaaccccggccaccacc |
6489079 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 14232860 - 14232908
Alignment:
| Q |
103 |
tcctcgtaagcttagctcaattg--atagggacaatgtatattatatac |
149 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
14232860 |
tcctcgtgagcttagctcaattgatatagggacaatgtataatatatac |
14232908 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 17064939 - 17064886
Alignment:
| Q |
94 |
aagaatttatcctcgtaagcttagctcaattgatagggacaatgtatattatat |
147 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| |||||| | || ||||||||| |
|
|
| T |
17064939 |
aagaatttatcctcgtgagcttaactcaattggtagggatattgcatattatat |
17064886 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 34860204 - 34860168
Alignment:
| Q |
111 |
agcttagctcaattgatagggacaatgtatattatat |
147 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| |
|
|
| T |
34860204 |
agcttagctcaattgatagggatattgtatattatat |
34860168 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 40716015 - 40715971
Alignment:
| Q |
103 |
tcctcgtaagcttagctcaattgatagggacaatgtatattatat |
147 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||| ||| ||||| |
|
|
| T |
40716015 |
tcctcgtgagcttagctcaattgatatggacaatgcataatatat |
40715971 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 31316628 - 31316680
Alignment:
| Q |
99 |
tttatcctcgtaagcttagctcaattgatagggacaatgtatattatatacaa |
151 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||||| | |||||||||||||||| |
|
|
| T |
31316628 |
tttatccccgtgagcttagctcagttgatagggatattgtatattatatacaa |
31316680 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 21549036 - 21549077
Alignment:
| Q |
106 |
tcgtaagcttagctcaattgatagggacaatgtatattatat |
147 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||| ||||| |
|
|
| T |
21549036 |
tcgtaagcttagctcagttgatatggacaatgtataatatat |
21549077 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 29687072 - 29687121
Alignment:
| Q |
98 |
atttatcctcgtaagcttagctcaattgatagggacaatgtatattatat |
147 |
Q |
| |
|
|||| ||||||| ||||||||||| |||||| ||||||| |||||||||| |
|
|
| T |
29687072 |
atttgtcctcgtgagcttagctcagttgatatggacaatatatattatat |
29687121 |
T |
 |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 1238159 - 1238205
Alignment:
| Q |
105 |
ctcgtaagcttagctcaattgatagggacaatgtatattatatacaa |
151 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| ||| ||||||||| |
|
|
| T |
1238159 |
ctcgtgagcttaactcaattgatagggacaatgcataatatatacaa |
1238205 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 23983999 - 23984044
Alignment:
| Q |
103 |
tcctcgtaagcttagctcaattgatagggacaatgtatattatata |
148 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| ||| |||||| |
|
|
| T |
23983999 |
tcctcgtaagcttagctcaattggtatggacaatgcataatatata |
23984044 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 30836370 - 30836301
Alignment:
| Q |
98 |
atttatcctcgtaagcttagctcaattgatagggacaatgtatattatatacaaaattttgggttcaaac |
167 |
Q |
| |
|
|||| ||||||||||||||||||| ||| || ||||||| ||| ||| ||||||||| |||||||||| |
|
|
| T |
30836370 |
atttgtcctcgtaagcttagctcagttggcagagacaatgcataatatttacaaaattcagggttcaaac |
30836301 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 27244652 - 27244696
Alignment:
| Q |
103 |
tcctcgtaagcttagctcaattgatagggacaatgtatattatat |
147 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| ||| ||||| |
|
|
| T |
27244652 |
tcctcgtgagcttagctcagttgatagggacaatgcataatatat |
27244696 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 34242825 - 34242881
Alignment:
| Q |
111 |
agcttagctcaattgatagggacaatgtatatta-tatacaaaattttgggttcaaa |
166 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || ||| |||| ||| ||||||||| |
|
|
| T |
34242825 |
agcttagctcaattgatagggacaatgcataatattatgcaaagtttggggttcaaa |
34242881 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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