View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_68 (Length: 294)
Name: NF9879_low_68
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 50 - 286
Target Start/End: Original strand, 32017704 - 32017940
Alignment:
| Q |
50 |
ctagcaatatttttctctgcccagaccttctttccattgccaaaggaccttgtagtgaccatatacggttgtgatggtctgtctgtcatcatcatcatac |
149 |
Q |
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| T |
32017704 |
ctagcaatatttttctctgcccagaccttctttccattgccaaaggaccttgtagtgaccatatacggttgtgatggtctgtctgtcatcatcatcatac |
32017803 |
T |
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| Q |
150 |
cattcccaatttcaaaaccattcaattgttctaattcacttttgttctcaatttcaatttctaacaaccacccctcttctcagtttcatgaaagaaagat |
249 |
Q |
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| T |
32017804 |
cattctcaatttcaaaaccattcaattgttctaattcacttttgttcttaatttcaatttctaacaaccacccctcttctcagtttcatgaaagaaagat |
32017903 |
T |
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| Q |
250 |
gggtggcgctgaatctggaaccaccgaaccctttgct |
286 |
Q |
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| T |
32017904 |
gggtggcgctgaatctggaaccatcgaaccctttgct |
32017940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 197
Target Start/End: Original strand, 10421789 - 10421907
Alignment:
| Q |
73 |
gaccttctttccattgccaaaggaccttgtagtgaccatatacggttgtgatggtctgtctgtcatcatcatcataccattcccaatttcaaaaccattc |
172 |
Q |
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| T |
10421789 |
gaccttttttgcatagccaaatgaccttgtagtgacc--atacggttgtgat----agtccgtcgtcatcatgataccattctcaatttcaaaaccatcc |
10421882 |
T |
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| Q |
173 |
aattgttctaattcacttttgttct |
197 |
Q |
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| T |
10421883 |
aattgttctaattcactttcgttct |
10421907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 19749736 - 19749810
Alignment:
| Q |
149 |
ccattcccaatttcaaaaccattcaattgttctaattcacttttgttctcaatttcaatttctaacaaccacccc |
223 |
Q |
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| T |
19749736 |
ccattctcaatttcaataccatccaactattctatttcactttcattttcaatctcaatttctaacaaccacccc |
19749810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 11590374 - 11590448
Alignment:
| Q |
149 |
ccattcccaatttcaaaaccattcaattgttctaattcacttttgttctcaatttcaatttctaacaaccacccc |
223 |
Q |
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| T |
11590374 |
ccattctcaatttcaataccatccaactattctatttcactttcattttcaatctcaatttctaacaaccacccc |
11590448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 44553701 - 44553627
Alignment:
| Q |
149 |
ccattcccaatttcaaaaccattcaattgttctaattcacttttgttctcaatttcaatttctaacaaccacccc |
223 |
Q |
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|||||| ||||||||| ||||| ||| | ||||| |||||||| || ||||| ||||||||||||||||||||| |
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| T |
44553701 |
ccattctcaatttcaataccatccaactattctatttcactttcattttcaatctcaatttctaacaaccacccc |
44553627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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