View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_low_7 (Length: 603)

Name: NF9879_low_7
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_low_7
NF9879_low_7
[»] chr7 (22 HSPs)
chr7 (12-340)||(36221990-36222313)
chr7 (405-588)||(36221743-36221926)
chr7 (24-340)||(36217999-36218310)
chr7 (124-334)||(35938799-35939004)
chr7 (406-588)||(36217752-36217934)
chr7 (123-314)||(32727038-32727224)
chr7 (123-331)||(35976915-35977118)
chr7 (123-331)||(35998327-35998530)
chr7 (445-588)||(32727359-32727502)
chr7 (127-334)||(35981485-35981687)
chr7 (127-334)||(36002897-36003099)
chr7 (123-246)||(35957460-35957583)
chr7 (142-314)||(35946271-35946438)
chr7 (445-588)||(35981797-35981940)
chr7 (445-588)||(36003209-36003352)
chr7 (406-588)||(35946529-35946711)
chr7 (445-588)||(35977231-35977374)
chr7 (445-588)||(35998643-35998786)
chr7 (141-331)||(35951909-35952094)
chr7 (477-588)||(35957808-35957919)
chr7 (462-584)||(35939131-35939253)
chr7 (32-88)||(35957369-35957425)
[»] chr1 (4 HSPs)
chr1 (21-331)||(18125078-18125383)
chr1 (126-255)||(18117530-18117659)
chr1 (445-588)||(18125496-18125639)
chr1 (406-588)||(18117804-18117986)
[»] chr2 (2 HSPs)
chr2 (123-227)||(26329140-26329244)
chr2 (478-586)||(26328787-26328895)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 12 - 340
Target Start/End: Complemental strand, 36222313 - 36221990
Alignment:
Q  12 catcacacgaatatattctattgcaatattctctagcttttcacttccattcaaggattgaaccaatccaagagctatccacagacaagtaatttcaaca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222313 catcacacgaatatattctattgcaatattctctagcttttcacttccattcaaggattgaaccaatccaagagctatccacagacaagtaatttcaaca 36222214  T
Q  112 atagaaaatgaataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222213 atagaaaatgaataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaa 36222114  T
Q  212 tatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||| || |||||||||||||||    
T  36222113 tatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttat-----ttaaatcaaattttgataacagagaacttcctaat 36222019  T
Q  312 gttttgacagccagcggaactccagcaca 340  Q
    |||||||||||||||||||||||||||||    
T  36222018 gttttgacagccagcggaactccagcaca 36221990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 405 - 588
Target Start/End: Complemental strand, 36221926 - 36221743
Alignment:
Q  405 aaatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttacta 504  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  36221926 aaatgcccatttcacaaacaaatacaaacagctctcttgcgaaagaccttccaaaatatacgaaggaacagtactcatcatggaagcaattgagttacta 36221827  T
Q  505 cgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgcacggtcatcattc 588  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36221826 catgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgcacggtcatcattc 36221743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 24 - 340
Target Start/End: Complemental strand, 36218310 - 36217999
Alignment:
Q  24 atattctattgcaatattctctagcttttcacttccattcaaggattgaaccaatccaagagctatccacagacaagtaatttcaacaatagaaaatgaa 123  Q
    ||||||| | ||||||| ||||||||||||||||||||| | || |||||| |||||||| | |||||||| |  ||| |||||||| |||  ||| | |    
T  36218310 atattctctggcaatatgctctagcttttcacttccatttatgggttgaactaatccaaggggtatccacaaaatagtcatttcaacgatattaaaggta 36218211  T
Q  124 taatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttct 223  Q
    || ||||||||||||||||||||| |||||||||| || |||| ||| |||||||||| |||||||||||||||||| ||||||||||||||| ||||||    
T  36218210 tagtctttgggatacaaggaaaaacaagcaaaacattgtctcagatatgatggcatttgatcatagcttaattttaaagcaggtaaaatatcatctttct 36218111  T
Q  224 tttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagcc 323  Q
    | |||||||| ||||| ||||||||||||||||| |||| ||||||     || |||||||||||||||||| |||||||||||||  ||| | ||||||    
T  36218110 tctgttctaaattccatatctcatggtctcttacaaataaccactt-----atctaaatcaaattttgagaacagagaacttcctaccgttctcacagcc 36218016  T
Q  324 agcggaactccagcaca 340  Q
    |||||||||||||||||    
T  36218015 agcggaactccagcaca 36217999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 124 - 334
Target Start/End: Original strand, 35938799 - 35939004
Alignment:
Q  124 taatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttct 223  Q
    |||||||||||||| | |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||  || ||    
T  35938799 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggcatttgatcatagcttaattttagtgcaggtaaaatatcattttgct 35938898  T
Q  224 tttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagcc 323  Q
    | |||||||| ||||| ||||||   |||||||| |||  ||||||     |||||||||||||||||| || |||||||||||||||||||| ||||||    
T  35938899 tctgttctaaattccatatctcagaatctcttacaaattcccactt-----atttaaatcaaattttgaaaacagagaacttcctaatgttttcacagcc 35938993  T
Q  324 agcggaactcc 334  Q
    || ||||||||    
T  35938994 agtggaactcc 35939004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 406 - 588
Target Start/End: Complemental strand, 36217934 - 36217752
Alignment:
Q  406 aatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactac 505  Q
    ||||||||||||||||||| | ||||| |   ||||  ||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||| ||||    
T  36217934 aatgcccatttcacaaacagagacaaacaatcctctaacgaaagaccttccaaaacatacgaaggaacagtacccatcatggaagcaactgagttgctac 36217835  T
Q  506 gtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgcacggtcatcattc 588  Q
    |||| |||||||| | ||||||| || || |||||||||||||||||| |  ||||||||||||||||||||| |||||||||    
T  36217834 gtgtggtcactataattttacttcctactgcaccaactttgatcaaatcttccaactcaatccattttgcacgatcatcattc 36217752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 123 - 314
Target Start/End: Original strand, 32727038 - 32727224
Alignment:
Q  123 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 222  Q
    ||||||||||||||| | ||||||  |||||||||| |||||||||||||||||||||| |||||||||||| || |||||||||||||||||| |||||    
T  32727038 ataatctttgggataaagggaaaagaaagcaaaacattgcctcaaataggatggcatttgatcatagcttaacttcaatgcaggtaaaatatcatctttc 32727137  T
Q  223 ttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgtt 314  Q
    || |||||||| ||||| ||||||   ||||| || |||||||||||     |||||||||| ||||||||||||  ||||||| |||||||    
T  32727138 ttctgttctaaattccatatctcagaatctctcacaaatatccactt-----atttaaatcatattttgagaataaggaacttcgtaatgtt 32727224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 123 - 331
Target Start/End: Original strand, 35976915 - 35977118
Alignment:
Q  123 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 222  Q
    ||||||||||||||| | ||||| |||| ||||||| || |||| ||| |||||||||| |||||||||||||||||  |||||||||||| || |||||    
T  35976915 ataatctttgggataaagggaaatataaacaaaacattgtctcatatatgatggcatttgatcatagcttaattttagcgcaggtaaaataccatctttc 35977014  T
Q  223 ttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagc 322  Q
    ||||||||||| ||||| ||||||  ||| || ||||||  ||||||       ||| |||||| |||||||| |||||||||||||||||| | |||||    
T  35977015 ttttgttctaaattccacatctcagagtccctaacgaattcccactt-----gcttatatcaaagtttgagaagagagaacttcctaatgttctcacagc 35977109  T
Q  323 cagcggaac 331  Q
     ||||||||    
T  35977110 tagcggaac 35977118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 123 - 331
Target Start/End: Original strand, 35998327 - 35998530
Alignment:
Q  123 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 222  Q
    ||||||||||||||| | ||||| |||| ||||||| || |||| ||| |||||||||| |||||||||||||||||  |||||||||||| || |||||    
T  35998327 ataatctttgggataaagggaaatataaacaaaacattgtctcatatatgatggcatttgatcatagcttaattttagcgcaggtaaaataccatctttc 35998426  T
Q  223 ttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagc 322  Q
    ||||||||||| ||||| ||||||  ||| || ||||||  ||||||       ||| |||||| |||||||| |||||||||||||||||| | |||||    
T  35998427 ttttgttctaaattccacatctcagagtccctaacgaattcccactt-----gcttatatcaaagtttgagaagagagaacttcctaatgttctcacagc 35998521  T
Q  323 cagcggaac 331  Q
     ||||||||    
T  35998522 tagcggaac 35998530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 445 - 588
Target Start/End: Original strand, 32727359 - 32727502
Alignment:
Q  445 gaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactt 544  Q
    ||||||||||||||||  ||||| |||| | |||||||||| ||||||| |||||| ||||||||||||||||||| ||| ||| || || |||| ||||    
T  32727359 gaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaaatgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgactt 32727458  T
Q  545 tgatcaaatttaacaactcaatccattttgcacggtcatcattc 588  Q
    | ||||||| || ||||||||||||||||||||| |||||||||    
T  32727459 ttatcaaatctatcaactcaatccattttgcacgatcatcattc 32727502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 127 - 334
Target Start/End: Original strand, 35981485 - 35981687
Alignment:
Q  127 tctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttctttt 226  Q
    ||||||||||| | |||||| ||||||||||| |||||||||||||||||||||| |||||| ||||| || |  ||||||||||||||| ||||||| |    
T  35981485 tctttgggatagagggaaaagtaagcaaaacactgcctcaaataggatggcatttgatcataacttaacttcagggcaggtaaaatatcatctttcttct 35981584  T
Q  227 gttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagc 326  Q
    | ||||  ||||| | ||||   || ||||| |||| ||||||     |||||||||||  ||||| || || ||||||||||||||||||||||| ||     
T  35981585 gctctagattccataactcagaatcccttacaaatacccactt-----atttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagt 35981679  T
Q  327 ggaactcc 334  Q
    ||||||||    
T  35981680 ggaactcc 35981687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 127 - 334
Target Start/End: Original strand, 36002897 - 36003099
Alignment:
Q  127 tctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttctttt 226  Q
    ||||||||||| | |||||| ||||||||||| |||||||||||||||||||||| |||||| ||||| || |  ||||||||||||||| ||||||| |    
T  36002897 tctttgggatagagggaaaagtaagcaaaacactgcctcaaataggatggcatttgatcataacttaacttcagggcaggtaaaatatcatctttcttct 36002996  T
Q  227 gttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagc 326  Q
    | ||||  ||||| | ||||   || ||||| |||| ||||||     |||||||||||  ||||| || || ||||||||||||||||||||||| ||     
T  36002997 gctctagattccataactcagaatcccttacaaatacccactt-----atttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagt 36003091  T
Q  327 ggaactcc 334  Q
    ||||||||    
T  36003092 ggaactcc 36003099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 123 - 246
Target Start/End: Original strand, 35957460 - 35957583
Alignment:
Q  123 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 222  Q
    ||||||||||||||| | |||||||||||||||||| || |||| ||| |||||||||| |||||| ||||||||||  |||||||||||||||    ||    
T  35957460 ataatctttgggataaagggaaaaataagcaaaacattgtctcagatatgatggcatttgatcataacttaattttagcgcaggtaaaatatcattaatc 35957559  T
Q  223 ttttgttctaagttccaaatctca 246  Q
    ||||||||||| ||||| ||||||    
T  35957560 ttttgttctaaattccacatctca 35957583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 142 - 314
Target Start/End: Original strand, 35946271 - 35946438
Alignment:
Q  142 gaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaa 241  Q
    ||||||||||||||||| || || | ||| |||||||||| |||||| ||||||||||  |||||||| |||||| |||||||||||||||| ||||| |    
T  35946271 gaaaaataagcaaaacattgtcttagatatgatggcatttgatcataacttaattttagcgcaggtaagatatcatctttcttttgttctaaattccaca 35946370  T
Q  242 tctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgtt 314  Q
    |||||  ||| || ||||||  ||||||     | ||| |||||| |||||||| ||||||||| ||||||||    
T  35946371 tctcagagtccctaacgaattcccactt-----acttatatcaaagtttgagaagagagaacttgctaatgtt 35946438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 445 - 588
Target Start/End: Original strand, 35981797 - 35981940
Alignment:
Q  445 gaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactt 544  Q
    |||||||||| ||||| ||||| |||||||  ||||||||| |||| |||||||||||||||||| ||||| |  | ||| ||| |  || | |||||||    
T  35981797 gaaagacctttcaaaagatacggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaattttgcttccagctgcgccaactt 35981896  T
Q  545 tgatcaaatttaacaactcaatccattttgcacggtcatcattc 588  Q
    ||||||||| |  ||||||||||||||||||||| |||||||||    
T  35981897 tgatcaaatctttcaactcaatccattttgcacgatcatcattc 35981940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 445 - 588
Target Start/End: Original strand, 36003209 - 36003352
Alignment:
Q  445 gaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactt 544  Q
    |||||||||| ||||| ||||| |||||||  ||||||||| |||| |||||||||||||||||| ||||| |  | ||| ||| |  || | |||||||    
T  36003209 gaaagacctttcaaaagatacggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaattttgcttccagctgcgccaactt 36003308  T
Q  545 tgatcaaatttaacaactcaatccattttgcacggtcatcattc 588  Q
    ||||||||| |  ||||||||||||||||||||| |||||||||    
T  36003309 tgatcaaatctttcaactcaatccattttgcacgatcatcattc 36003352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 406 - 588
Target Start/End: Original strand, 35946529 - 35946711
Alignment:
Q  406 aatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactac 505  Q
    ||||||||||| ||||||| | ||||| |  ||| | | |||||||||||||||||||| | |||||||  ||||||||| |||||||||| |||||| |    
T  35946529 aatgcccatttgacaaacagagacaaacaattctttggagaaagaccttccaaaatatatggaggaacatcacccatcatcgaagcaattgcgttactgc 35946628  T
Q  506 gtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgcacggtcatcattc 588  Q
    |||| ||||| || | ||| ||| ||  | |||||||||| ||||||| |  ||| |||| ||| |||||||| |||||||||    
T  35946629 gtgttgtcaccataattttgcttcctggtgcaccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattc 35946711  T

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Target: chr7; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 445 - 588
Target Start/End: Original strand, 35977231 - 35977374
Alignment:
Q  445 gaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactt 544  Q
    |||||||||| ||||| ||| | |||||||  ||||||||| ||||||||||||||||||||||| ||||| || | ||| ||| ||  | |||||||||    
T  35977231 gaaagacctttcaaaagatatggaggaacatcacccatcatcgaagcaattgagttactacgtgttgtcacgataattttgcttcctggtgcaccaactt 35977330  T
Q  545 tgatcaaatttaacaactcaatccattttgcacggtcatcattc 588  Q
    | ||||||| |  ||| |||| ||| |||||||| |||||||||    
T  35977331 ttatcaaatctttcaattcaagccactttgcacgatcatcattc 35977374  T

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Target: chr7; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 445 - 588
Target Start/End: Original strand, 35998643 - 35998786
Alignment:
Q  445 gaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactt 544  Q
    |||||||||| ||||| ||| | |||||||  ||||||||| ||||||||||||||||||||||| ||||| || | ||| ||| ||  | |||||||||    
T  35998643 gaaagacctttcaaaagatatggaggaacatcacccatcatcgaagcaattgagttactacgtgttgtcacgataattttgcttcctggtgcaccaactt 35998742  T
Q  545 tgatcaaatttaacaactcaatccattttgcacggtcatcattc 588  Q
    | ||||||| |  ||| |||| ||| |||||||| |||||||||    
T  35998743 ttatcaaatctttcaattcaagccactttgcacgatcatcattc 35998786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 141 - 331
Target Start/End: Original strand, 35951909 - 35952094
Alignment:
Q  141 ggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaa 240  Q
    ||||||| | |||| |||||| || | |||||||| ||||| ||||||||||||||| |  ||||||||||||||| |||||| ||||||||| ||||||    
T  35951909 ggaaaaagaggcaatacaatgtcttagataggatgacatttgatcatagcttaatttcagggcaggtaaaatatcatctttctgttgttctaaattccaa 35952008  T
Q  241 atctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagcggaac 331  Q
    ||  ||  |||||| || |||  ||||||     | ||||||| || |||||||| || |||||||| |||| ||| |||||||| |||||    
T  35952009 atagcagagtctctgacaaattcccactt-----acttaaatcgaagtttgagaagagggaacttcccaatgatttcacagccagtggaac 35952094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 588
Target Start/End: Original strand, 35957808 - 35957919
Alignment:
Q  477 acccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgca 576  Q
    ||||||||| ||||||||||||||||| ||||| ||||| || | ||| ||| ||  | |||||||||| ||||| |  | ||| |||| ||| ||||||    
T  35957808 acccatcattgaagcaattgagttactgcgtgttgtcacgataattttgcttcctggtgcaccaacttttatcaattcgatcaattcaagccactttgca 35957907  T
Q  577 cggtcatcattc 588  Q
    || |||||||||    
T  35957908 cgatcatcattc 35957919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 584
Target Start/End: Original strand, 35939131 - 35939253
Alignment:
Q  462 atacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaac 561  Q
    |||||| |||||| | ||| |||| |||||||| || ||||| ||||| ||||| |||| ||| | |||| ||   |||||||| ||||||| |  ||||    
T  35939131 atacgagggaacagtgcccgtcattgaagcaatcgatttactgcgtgttgtcacaatgattttgcattctactgtgccaacttttatcaaatctttcaac 35939230  T
Q  562 tcaatccattttgcacggtcatc 584  Q
    ||||||||||||| ||| |||||    
T  35939231 tcaatccattttgaacgatcatc 35939253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 35957369 - 35957425
Alignment:
Q  32 ttgcaatattctctagcttttcacttccattcaaggattgaaccaatccaagagcta 88  Q
    |||||||| | || ||||||||||||||||| | ||||||||| |||||||| ||||    
T  35957369 ttgcaatactttccagcttttcacttccatttagggattgaactaatccaagggcta 35957425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 21 - 331
Target Start/End: Original strand, 18125078 - 18125383
Alignment:
Q  21 aatatattctattgcaatattctctagcttttcacttccattcaaggattgaaccaatccaagagctatccacagacaagtaatttcaacaatagaaaat 120  Q
    |||||||||| ||||||||| |||||| ||||||||||| |||  || |||||| |||||||| |||| ||| |||  | |||| || | | || | ||     
T  18125078 aatatattctcttgcaatatcctctagtttttcacttccgttccggggttgaactaatccaagggctacccaaagagcaataatatccaaactacagaaa 18125177  T
Q  121 gaataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctt 220  Q
    | |  |||||| ||||| | ||| ||||||||||| || ||||| ||||||||||||||||  |||||||| ||||||| |||||||||||||||| |||    
T  18125178 gtaatatctttaggataaagggagaaataagcaaagcattgccttaaataggatggcatttggtcatagctcaattttagtgcaggtaaaatatcatctt 18125277  T
Q  221 tcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgaca 320  Q
    | |  |||| ||| ||||| | ||||   |||||||| ||||||||     |  |||||||||||||||||||||||| ||||||||||||||| | |||    
T  18125278 tttgctgttttaaattccacagctcagaatctcttacaaatatcca-----tgtatttaaatcaaattttgagaatagggaacttcctaatgttctaaca 18125372  T
Q  321 gccagcggaac 331  Q
    || || |||||    
T  18125373 gctagtggaac 18125383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 126 - 255
Target Start/End: Original strand, 18117530 - 18117659
Alignment:
Q  126 atctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttcttt 225  Q
    ||||||||||||||  | ||  |||||||| || ||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||  || ||||    
T  18117530 atctttgggatacatagcaatgtaagcaaagcagtgccttaaataggatggcattttatcatagcttaattttagtgcaggtaaaatatcattttgcttt 18117629  T
Q  226 tgttctaagttccaaatctcatggtctctt 255  Q
    ||||||||  |||| ||||||  |||||||    
T  18117630 tgttctaaagtccacatctcagagtctctt 18117659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 445 - 588
Target Start/End: Original strand, 18125496 - 18125639
Alignment:
Q  445 gaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactt 544  Q
    |||||||||| ||||| ||| || |||||| |||||||||| ||||||||||||||| ||||||| ||||| || | ||| ||| ||  |   |||||||    
T  18125496 gaaagaccttgcaaaacatatgagggaacattacccatcatcgaagcaattgagttattacgtgttgtcaccataattttgcttcctcttgtgccaactt 18125595  T
Q  545 tgatcaaatttaacaactcaatccattttgcacggtcatcattc 588  Q
    | ||||||| |  |||||| ||||| |||||||| |||||||||    
T  18125596 ttatcaaatctttcaactcgatccactttgcacgatcatcattc 18125639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 588
Target Start/End: Original strand, 18117804 - 18117986
Alignment:
Q  406 aatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactac 505  Q
    ||||||||||||||||||||| | ||| || | ||    ||||| ||||  |||| ||| || |||||| |||||||||| || ||||||||||| || |    
T  18117804 aatgcccatttcacaaacaaagataaacagttttcaatagaaaggccttttaaaacataggagggaacagtacccatcatcgatgcaattgagttgctgc 18117903  T
Q  506 gtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgcacggtcatcattc 588  Q
    |||| ||| | |||||||| ||| || ||   |||||||| ||||||| |  |||||| ||||||||| |||  |||||||||    
T  18117904 gtgttgtcgccatgactttgcttcctactgtgccaactttaatcaaatctttcaactcgatccattttacacaatcatcattc 18117986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 26329244 - 26329140
Alignment:
Q  123 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 222  Q
    ||||||||||||| | | ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || |   |||||||||||||| ||||     
T  26329244 ataatctttgggaaaaagggaaaaataagcaaaacaatgtctcaaataggatggcatttgatcatagcttaacttaagcacaggtaaaatatcatctttg 26329145  T
Q  223 ttttg 227  Q
    |||||    
T  26329144 ttttg 26329140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 478 - 586
Target Start/End: Complemental strand, 26328895 - 26328787
Alignment:
Q  478 cccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgcac 577  Q
    |||||||| ||||||||  ||||||||||||| ||||||| || ||| |||||| || |||||||||| |||| || |  ||||||||||||||||| ||    
T  26328895 cccatcatcgaagcaatcaagttactacgtgttgtcactaagattttgctttctactgcaccaacttttatcagatctttcaactcaatccattttgaac 26328796  T
Q  578 ggtcatcat 586  Q
    ||| |||||    
T  26328795 ggttatcat 26328787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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