View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9879_low_70 (Length: 292)
Name: NF9879_low_70
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_70 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 6053001 - 6052737
Alignment:
| Q |
11 |
caaagggacattagcttgagagaccctatgataatattttctaacatataatgattgaagtaataataataaaaatcttagccccacttagccttaaaca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6053001 |
caaagggacattagcttgagagaccctatgataatattttctaacatataatgattgaagtaataataataaaaatcttagccccacttagccttaaaca |
6052902 |
T |
|
| Q |
111 |
aaaattatggattcgaagggaaggagagttacttggtagaaatattgaaccatagccatcctcaatagctacacacaaaatgcgatctagcaaatcaaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6052901 |
aaaattatggattcgaagggaaggagagatacttggtagaaatattgaaccatagccatcctcaatagctacacacagaatgcgatctagcaaatcaaaa |
6052802 |
T |
|
| Q |
211 |
tggcctcttttccattaatgaaaatgacaactttgttgtcttttctctatttattgcgtgtttat |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6052801 |
tggcctcttttccattaatgaaaatgacaactttgttgtcttttctctatttattgcgtgtttat |
6052737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University