View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_71 (Length: 278)
Name: NF9879_low_71
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_71 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 75 - 213
Target Start/End: Original strand, 48815337 - 48815475
Alignment:
| Q |
75 |
caaccttataacataattttctcttcagtaacatttcggctaaatgaaatttctgaattgtccagattaatcggttggtctgaagctaactggtatagat |
174 |
Q |
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| T |
48815337 |
caaccttataacataattttctcttcagtaacatttcggctaaaggaaatttctgaattgtccagattaatcggttggtctgaagctaactggtatagat |
48815436 |
T |
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| Q |
175 |
ctaggattttattcaccacatgtgcatcgtggagagaat |
213 |
Q |
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| T |
48815437 |
ctaggattttattcaccgcatgtgcatcatggagagaat |
48815475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 48815476 - 48815516
Alignment:
| Q |
231 |
agaaaagatgactgatggttggagcgccgcttcctatgctt |
271 |
Q |
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| T |
48815476 |
agaaaagatgactgatggttggagcgcctcttcctatgctt |
48815516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 20780401 - 20780342
Alignment:
| Q |
74 |
ccaaccttataacataatttt---ctcttcagtaacatttcggctaaatgaaatttctga |
130 |
Q |
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| T |
20780401 |
ccaaccttagaacatgatttttctctcttctgtaacgtttcggctaaatgaaatttctga |
20780342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 191
Target Start/End: Original strand, 28707953 - 28708051
Alignment:
| Q |
93 |
ttctcttcagtaacatttcggctaaatgaaatttctgaattgtccagattaatcggttggtctgaagctaactggtatagatctaggattttattcacc |
191 |
Q |
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| T |
28707953 |
ttctcttcaggtacatttcagctaaaggaaatttctgatttgtccaaattaatcagttgacctgaagctgattgatataagtctaggattttattcacc |
28708051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 7371718 - 7371657
Alignment:
| Q |
91 |
ttttctcttcagtaacatttcggctaaatgaaatttctgaattgtccagattaatcggttgg |
152 |
Q |
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| T |
7371718 |
ttttctcttcaataacatttcggctaaaggaaatttctaactagtccatattaatcagttgg |
7371657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 5142898 - 5142845
Alignment:
| Q |
92 |
tttctcttcagtaacatttcggctaaatgaaatttctgaattgtccagattaat |
145 |
Q |
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| T |
5142898 |
tttctcttcaagaacatttcggctaaaagaaatttccgacttatccagattaat |
5142845 |
T |
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