View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_72 (Length: 278)
Name: NF9879_low_72
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_72 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 3808387 - 3808141
Alignment:
| Q |
14 |
agagctatttataaactttaaccaaaattttccacacatctatctctataaaatattggcgatttacatacaaagtatgtggggtgtgacatatgcaagt |
113 |
Q |
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| T |
3808387 |
agagctatttataaactttaaccaaaattttccacacatctatctctataaaatattggcgatttacatacaaagtatgtggggtgtgacatatgcaagt |
3808288 |
T |
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| Q |
114 |
cactcactacttagttttaaccaaagaaaaggggaacaaatgaaattaaccaagttcaaaacgaccaggaataaaacttattaagttgattgtaccaaaa |
213 |
Q |
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| T |
3808287 |
cactcactacttagttctaaccaaagaaaaggggaacaaatgaaattaaccaagttcaaaacgatcaggaataaaacttattaagttgattgtaccaaaa |
3808188 |
T |
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| Q |
214 |
cttagaataaaaacttattaagttgatctaccttatctcaatcacac |
260 |
Q |
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| T |
3808187 |
cttagaataaaaacttattaagttgatctaccttatcacaatcacac |
3808141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 64 - 165
Target Start/End: Complemental strand, 3776593 - 3776491
Alignment:
| Q |
64 |
aaatattggcgatttacatacaaagtatgtggggtgtgacatatgcaagtcactcactacttagttttaacc--aaagaaaaggggaacaaatgaaatta |
161 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||| |||||||| ||| ||||| |||||||| ||||||| |
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| T |
3776593 |
aaatattggcgatttacatacaa-gtatgtggggtgtgacatttgcaagtcactcactccttaattttaaccaaaaaaaaaagaggaacaaaagaaatta |
3776495 |
T |
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| Q |
162 |
acca |
165 |
Q |
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|||| |
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| T |
3776494 |
acca |
3776491 |
T |
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