View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_73 (Length: 273)
Name: NF9879_low_73
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_73 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 48084907 - 48085156
Alignment:
| Q |
19 |
agagctgcatctttatacaatcctcaacttgttgacatgatcagatcactaaaccaagagattggctctgacatcttcgttgctgctgatgcttatagaa |
118 |
Q |
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| T |
48084907 |
agagctgcatccttatacaatcctcaacttgttgacatgatcagatcactaaaccaagagattggctctgacatctttgttgctgctgatgcatatagaa |
48085006 |
T |
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| Q |
119 |
tgcacatggattacattaccaaccctcaagcttatggtatgtagtagtgtaatgcaatattcatattcctttaaattgtttgactttgaccaactctatc |
218 |
Q |
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| T |
48085007 |
tgcacatggattacattaccaaccctcaagcttatggtatgtagtagtgtaatgccatattcatattcctttaaattgtttgactttgaccaactctatc |
48085106 |
T |
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| Q |
219 |
tatatatgttatgtattgaattgggc-ttgacaggatttgcaacaccaaa |
267 |
Q |
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| T |
48085107 |
tatatatgttatgtattgaattgggctttgacaggatttgcaacatcaaa |
48085156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 35376665 - 35376524
Alignment:
| Q |
19 |
agagctgcatctttatacaatcctcaacttgttgacatgatcagatcactaaaccaagagattggctctgacatcttcgttgctgctgatgcttatagaa |
118 |
Q |
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| T |
35376665 |
agagctgcctccttatataatccacaacttgtcgaaatgatcaaagaactcaacacagagattggttctgatgtcttcattgctgctaatgcacgtcaaa |
35376566 |
T |
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| Q |
119 |
tgcacatggattacattaccaaccctcaagcttatggtatgt |
160 |
Q |
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| T |
35376565 |
tgcacatggattttattaccaaccctcaagcttttggtatgt |
35376524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 35358087 - 35357946
Alignment:
| Q |
19 |
agagctgcatctttatacaatcctcaacttgttgacatgatcagatcactaaaccaagagattggctctgacatcttcgttgctgctgatgcttatagaa |
118 |
Q |
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|||||||| || ||||| ||||| ||||||||| | ||||||| | ||| ||| ||||||||| ||| ||||| |||||| | |||| ||| || |
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| T |
35358087 |
agagctgcgtccttatataatccacaacttgttcaaatgatcacacaactcaacagagagattggtgatgatgtcttcattgctgttaatgcacataaaa |
35357988 |
T |
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| Q |
119 |
tgcacatggattacattaccaaccctcaagcttatggtatgt |
160 |
Q |
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| T |
35357987 |
tgcacatggattttattaccaaccctaaagcttttggtatgt |
35357946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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