View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_78 (Length: 266)
Name: NF9879_low_78
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_78 |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 82 - 247
Target Start/End: Original strand, 11649729 - 11649896
Alignment:
| Q |
82 |
cctccctaatggtgaccaaaa-ctaaaggaagaatgaac-aaatccactccatcagaaagatgcgattcatgaaatcaataatcaaaccaaaaagtcccg |
179 |
Q |
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| T |
11649729 |
cctccctcttggtgaccaaaaactaaaggaagaatgaaccaaatccactttatgagaaagatgcgattcatgaaatcaataaacaaaccaaaaagtcccg |
11649828 |
T |
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| Q |
180 |
ctcaaatgcaaccaaacatgccctctacatatataggctaccagctccaaaagagaagtggttccacc |
247 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11649829 |
ctcaaaggcaaccaaacatgccctctacatatataggctaccaactccaaaagagaagtggttccacc |
11649896 |
T |
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