View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_low_8 (Length: 591)

Name: NF9879_low_8
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_low_8
NF9879_low_8
[»] chr4 (2 HSPs)
chr4 (5-576)||(41680542-41681131)
chr4 (409-453)||(24403814-24403858)
[»] chr1 (4 HSPs)
chr1 (409-575)||(19036570-19036738)
chr1 (243-333)||(19036813-19036903)
chr1 (410-452)||(7793723-7793765)
chr1 (409-455)||(27682530-27682576)
[»] chr2 (2 HSPs)
chr2 (409-575)||(9684229-9684397)
chr2 (159-333)||(9683977-9684153)
[»] chr8 (5 HSPs)
chr8 (243-333)||(24323001-24323091)
chr8 (247-332)||(4701024-4701109)
chr8 (409-453)||(10949994-10950038)
chr8 (409-453)||(10957999-10958043)
chr8 (409-453)||(24322890-24322934)
[»] chr7 (2 HSPs)
chr7 (243-333)||(19279953-19280043)
chr7 (409-453)||(19279834-19279878)
[»] chr5 (1 HSPs)
chr5 (243-333)||(6820794-6820884)
[»] chr3 (4 HSPs)
chr3 (211-333)||(6251837-6251958)
chr3 (243-330)||(53379031-53379118)
chr3 (243-333)||(6172525-6172615)
chr3 (282-330)||(1673634-1673682)
[»] chr6 (2 HSPs)
chr6 (411-453)||(10404743-10404785)
chr6 (409-453)||(29336871-29336915)


Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 5 - 576
Target Start/End: Complemental strand, 41681131 - 41680542
Alignment:
Q  5 agtttggtgttagggtgttaggtggtgcaaatgccaattttcacaatgccaacaagatgttgatcaagtgaaatggaggtggttttttggctatgttcag 104  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41681131 agtttggtgtcagggtattaggtggtgcaaatgccaattttcacaatgccaacaagatgttgatcaagtgaaatggaggtggttttttggctatgttcag 41681032  T
Q  105 tgtatagacaagtcaacactattgtgcaaagtgagggtaggatgcccatctat-------------------atttatggttaggcagcgaggttatacc 185  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||                   ||||||||||||||||||||||||||||    
T  41681031 tgtatagacaagtcaacactgttctgcaaagtgagggtaggatgcccatctatttttttgtggtttcaatttatttatggttaggcagcgaggttatacc 41680932  T
Q  186 ttagggatggacattatgttagacactggagtgcagcaaggtgactcgaaggggactctcctttttgctcttgtgttacaccttcttattaattaaatca 285  Q
    ||| ||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  41680931 ttacggatggacattatgtaagtcactggagtgcagcaagttgacttgaaggggactctcctttttgctcttgtgttacacattcttattaattaaatta 41680832  T
Q  286 aatacaattgcaagtttttccttcatgcttggtatcttgatgatgggattatcattgggggattcaaatgatgagtctaaaacacttgacatcattcgga 385  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| || |||| |||    
T  41680831 aatacaattgcaagttttttcttcatacttggtatcttgatgatgggattatcatagggggattcagatgatgagtctaaaacacttggcaccatttgga 41680732  T
Q  386 agttgtccctattaccagacatggaattgaatatttgtaagactgagatcttttgaccttcgtgtgataacagtaaacatcgttggggttgttccttcgc 485  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| | | ||| |||||||||||||||||||||||    
T  41680731 agttgtccctattactagacatggaattgaatatttgtaggactgagatcttttgaccttcgtgtgatgataataagcatcgttggggttgttccttcgc 41680632  T
Q  486 acattgggaggccaatgttgggggtgaagctgctcggaggggatgttagtcaggatagatattttatcgaggggttgaccaggaagagagt 576  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||    
T  41680631 acattgggaggccaatgttgggggtgaagctgctc-gaggggatgttagtcaggatagagattttatcgaggggttggccatgaagagagt 41680542  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 453
Target Start/End: Complemental strand, 24403858 - 24403814
Alignment:
Q  409 gaattgaatatttgtaagactgagatcttttgaccttcgtgtgat 453  Q
    ||||||||||| ||||||||||| |||||||||| ||||||||||    
T  24403858 gaattgaatatctgtaagactgaaatcttttgacattcgtgtgat 24403814  T

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Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 409 - 575
Target Start/End: Complemental strand, 19036738 - 19036570
Alignment:
Q  409 gaattgaatatttgtaagactgagatcttttgaccttcgtgtgataacagtaaacatcgt-tggggttgtt-ccttcgcacattgggaggccaatgttgg 506  Q
    |||||||||||||||||||||||||||||||| ||||| | ||||   | ||| ||||||  ||||||||| ||| || | |||||||||||||  ||||    
T  19036738 gaattgaatatttgtaagactgagatcttttggccttcatatgatggtaataagcatcgtggggggttgttccctgcggatattgggaggccaacattgg 19036639  T
Q  507 gggtgaagctgctcggaggggatgttagtcaggatagatattttatcgaggggttgaccaggaagagag 575  Q
    |||||||  |||| ||||||| ||||||||  |||| |  |||||| ||||||||| ||| ||||||||    
T  19036638 gggtgaaattgcttggaggggttgttagtcgagataaaagttttattgaggggttggccatgaagagag 19036570  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 243 - 333
Target Start/End: Complemental strand, 19036903 - 19036813
Alignment:
Q  243 ctcctttttgctcttgtgttacaccttcttattaattaaatcaaatacaattgcaagtttttccttcatgcttggtatcttgatgatggga 333  Q
    |||||||||||||||||||| |||| ||||||| || | |||| | | | ||||||| || | |||||||||||||| |||||||||||||    
T  19036903 ctcctttttgctcttgtgttgcaccctcttattcatcatatcagagatagttgcaagcttattcttcatgcttggtaccttgatgatggga 19036813  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 452
Target Start/End: Original strand, 7793723 - 7793765
Alignment:
Q  410 aattgaatatttgtaagactgagatcttttgaccttcgtgtga 452  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||    
T  7793723 aattgaatattcgtaagactgagatcttttggccttcatgtga 7793765  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 27682530 - 27682576
Alignment:
Q  409 gaattgaatatttgtaagactgagatcttttgaccttcgtgtgataa 455  Q
    ||||||||||||  ||||| |||||||||||||| ||||||||||||    
T  27682530 gaattgaatattcataagagtgagatcttttgactttcgtgtgataa 27682576  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 409 - 575
Target Start/End: Original strand, 9684229 - 9684397
Alignment:
Q  409 gaattgaatatttgtaagactgagatcttttgaccttcgtgtgataacagtaaacatcgt-tggggttg-ttccttcgcacattgggaggccaatgttgg 506  Q
    ||||||||||||||||||||||| |||||||| ||||| ||||||   | ||| ||||||  ||||||| ||||  || | ||||||||||| | |||||    
T  9684229 gaattgaatatttgtaagactgaaatcttttggccttcatgtgatggtaataagcatcgtggggggttgtttcccgcggatattgggaggccgacgttgg 9684328  T
Q  507 gggtgaagctgctcggaggggatgttagtcaggatagatattttatcgaggggttgaccaggaagagag 575  Q
    |||||||  ||||||| |||| |||||| |  |||| |  |||||||||||||||| ||| ||||||||    
T  9684329 gggtgaaattgctcggtggggctgttagccgagataaaggttttatcgaggggttggccatgaagagag 9684397  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 159 - 333
Target Start/End: Original strand, 9683977 - 9684153
Alignment:
Q  159 tttatggttaggcagcgaggttataccttagggatggacat--tatgttagacactggagtgcagcaaggtgactcgaaggggactctcctttttgctct 256  Q
    |||||||  ||||| |||| ||||||||| | |||||||||  |||||  |  ||||||||||| ||||| ||| ||   ||| | ||||||||||||||    
T  9683977 tttatggacaggcaacgagattataccttggtgatggacatattatgtctgctactggagtgcaacaaggcgacccgttagggccgctcctttttgctct 9684076  T
Q  257 tgtgttacaccttcttattaattaaatcaaatacaattgcaagtttttccttcatgcttggtatcttgatgatggga 333  Q
    |||||| |||| ||||||| || | |||| | | | ||||||  || | |||||||||||||| |||||||||||||    
T  9684077 tgtgttgcaccctcttattcatcagatcagagatagttgcaaacttcttcttcatgcttggtaccttgatgatggga 9684153  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 243 - 333
Target Start/End: Complemental strand, 24323091 - 24323001
Alignment:
Q  243 ctcctttttgctcttgtgttacaccttcttattaattaaatcaaatacaattgcaagtttttccttcatgcttggtatcttgatgatggga 333  Q
    ||||||||||||||| |||| |||| ||||||| |  | |||||| | | ||||||| || | ||||||||||||||||||||||||||||    
T  24323091 ctcctttttgctcttatgttgcaccctcttattcagcatatcaaagatagttgcaagcttcttcttcatgcttggtatcttgatgatggga 24323001  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 332
Target Start/End: Complemental strand, 4701109 - 4701024
Alignment:
Q  247 tttttgctcttgtgttacaccttcttattaattaaatcaaatacaattgcaagtttttccttcatgcttggtatcttgatgatggg 332  Q
    |||||| |||||||||||||| |||| ||  | | |||| | | ||||||||| |||| ||| ||| |||||||||||||||||||    
T  4701109 tttttggtcttgtgttacaccctcttgttcctcagatcagagataattgcaagctttttctttatgtttggtatcttgatgatggg 4701024  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 453
Target Start/End: Original strand, 10949994 - 10950038
Alignment:
Q  409 gaattgaatatttgtaagactgagatcttttgaccttcgtgtgat 453  Q
    ||||||||||||||| |  ||||||||||||||||||| ||||||    
T  10949994 gaattgaatatttgtgattctgagatcttttgaccttcatgtgat 10950038  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 453
Target Start/End: Original strand, 10957999 - 10958043
Alignment:
Q  409 gaattgaatatttgtaagactgagatcttttgaccttcgtgtgat 453  Q
    ||||||||||||||| |  ||||||||||||||||||| ||||||    
T  10957999 gaattgaatatttgtgattctgagatcttttgaccttcatgtgat 10958043  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 453
Target Start/End: Complemental strand, 24322934 - 24322890
Alignment:
Q  409 gaattgaatatttgtaagactgagatcttttgaccttcgtgtgat 453  Q
    ||||||||||||  |||||||||||||||||| ||||| ||||||    
T  24322934 gaattgaatattcataagactgagatcttttggccttcatgtgat 24322890  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 243 - 333
Target Start/End: Complemental strand, 19280043 - 19279953
Alignment:
Q  243 ctcctttttgctcttgtgttacaccttcttattaattaaatcaaatacaattgcaagtttttccttcatgcttggtatcttgatgatggga 333  Q
    |||||||||||||||||||| |||| ||||||| || | |||| | | | ||||||| || | |||||||||||||| |||||||||||||    
T  19280043 ctcctttttgctcttgtgttgcaccctcttattcatcatatcagagatagttgcaagcttcttcttcatgcttggtaccttgatgatggga 19279953  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 453
Target Start/End: Complemental strand, 19279878 - 19279834
Alignment:
Q  409 gaattgaatatttgtaagactgagatcttttgaccttcgtgtgat 453  Q
    |||||||||||| ||||||||||||||||||| ||||| ||||||    
T  19279878 gaattgaatattcgtaagactgagatcttttggccttcatgtgat 19279834  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 243 - 333
Target Start/End: Original strand, 6820794 - 6820884
Alignment:
Q  243 ctcctttttgctcttgtgttacaccttcttattaattaaatcaaatacaattgcaagtttttccttcatgcttggtatcttgatgatggga 333  Q
    ||||||||| ||||| ||||||||| ||||||| || || ||||| | | ||||||| || |  |||||||||||||||||||||||||||    
T  6820794 ctccttttttctcttttgttacaccctcttattcatcaattcaaagatagttgcaagcttctttttcatgcttggtatcttgatgatggga 6820884  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 211 - 333
Target Start/End: Original strand, 6251837 - 6251958
Alignment:
Q  211 ctggagtgcagcaaggtgactcgaaggggactctcctttttgctcttgtgttacaccttcttattaattaaatcaaatacaattgcaagtttttccttca 310  Q
    |||||||||| ||||||||| |  |||| || ||||||||||||||| ||||||||| ||||||| || | || | | | | ||||||| || | |||||    
T  6251837 ctggagtgcaacaaggtgacccataggg-acgctcctttttgctcttatgttacaccctcttattcatcagattagaaatagttgcaagcttcttcttca 6251935  T
Q  311 tgcttggtatcttgatgatggga 333  Q
    || ||||||||||||||||||||    
T  6251936 tgtttggtatcttgatgatggga 6251958  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 243 - 330
Target Start/End: Complemental strand, 53379118 - 53379031
Alignment:
Q  243 ctcctttttgctcttgtgttacaccttcttattaattaaatcaaatacaattgcaagtttttccttcatgcttggtatcttgatgatg 330  Q
    ||||||||||||| |||||| |||| ||||||| || | |||| | | | ||||||| || | |||||||||||||||||||||||||    
T  53379118 ctcctttttgctcgtgtgttgcaccctcttattcatcatatcagagatagttgcaagcttcttcttcatgcttggtatcttgatgatg 53379031  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 333
Target Start/End: Original strand, 6172525 - 6172615
Alignment:
Q  243 ctcctttttgctcttgtgttacaccttcttattaattaaatcaaatacaattgcaagtttttccttcatgcttggtatcttgatgatggga 333  Q
    ||||||||||||||| ||||||||| ||||||| || | || | | | | ||||||| || | ||||||| ||||||||||||||||||||    
T  6172525 ctcctttttgctcttatgttacaccctcttattcatcagattagaaatagttgcaagattcttcttcatgtttggtatcttgatgatggga 6172615  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 330
Target Start/End: Complemental strand, 1673682 - 1673634
Alignment:
Q  282 atcaaatacaattgcaagtttttccttcatgcttggtatcttgatgatg 330  Q
    |||| ||||| |||||||||| | ||| |||||||||||||||||||||    
T  1673682 atcatatacagttgcaagtttcttcttaatgcttggtatcttgatgatg 1673634  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 453
Target Start/End: Complemental strand, 10404785 - 10404743
Alignment:
Q  411 attgaatatttgtaagactgagatcttttgaccttcgtgtgat 453  Q
    |||||||||| ||||||||||||||||||||||||| ||||||    
T  10404785 attgaatattcgtaagactgagatcttttgaccttcatgtgat 10404743  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 453
Target Start/End: Original strand, 29336871 - 29336915
Alignment:
Q  409 gaattgaatatttgtaagactgagatcttttgaccttcgtgtgat 453  Q
    |||||||||||| ||||||||||||||||||  ||||| ||||||    
T  29336871 gaattgaatattcgtaagactgagatctttttgccttcatgtgat 29336915  T

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