View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_low_80 (Length: 266)

Name: NF9879_low_80
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_low_80
NF9879_low_80
[»] chr3 (5 HSPs)
chr3 (1-240)||(19768071-19768310)
chr3 (64-236)||(29199652-29199821)
chr3 (88-236)||(12572307-12572455)
chr3 (88-236)||(13548771-13548919)
chr3 (1-35)||(45456360-45456394)
[»] chr6 (1 HSPs)
chr6 (1-240)||(22082764-22083003)
[»] chr4 (1 HSPs)
chr4 (1-240)||(37616977-37617211)
[»] chr5 (2 HSPs)
chr5 (73-236)||(4351630-4351793)
chr5 (1-35)||(40164874-40164908)
[»] chr1 (3 HSPs)
chr1 (142-221)||(51389655-51389734)
chr1 (1-35)||(6921715-6921749)
chr1 (1-35)||(38238129-38238163)
[»] chr8 (1 HSPs)
chr8 (143-236)||(770338-770428)
[»] chr2 (1 HSPs)
chr2 (3-35)||(7827613-7827645)
[»] chr7 (1 HSPs)
chr7 (147-228)||(32662957-32663038)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 19768071 - 19768310
Alignment:
Q  1 tcgtatttgaattaagaagacttaagtttatatgtccaagaattaagtttatatgttcggacatgaggaagctttttcttcgtggttgtcagtgtctgtt 100  Q
    |||||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||||||| ||||    
T  19768071 tcgtatttgaattaagaacacttaagcttatatgtccaagacttaagcttatatgttcggacatgagggagctttttcttcgtggctgtcagtgtgtgtt 19768170  T
Q  101 atgctgcattatgtgttttgttcatgtaagnnnnnnncctccgctgctacttcaaattcaggtctgccttcgatgtttctgtttagccattttgtgcgat 200  Q
    || ||||||||||||||||||| |||||||       |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19768171 atactgcattatgtgttttgtttatgtaagtttttttcctctgctgctacttcaaattcaggtctgccttcaatgtttctgtttagccattttgtgcgat 19768270  T
Q  201 aggctttgttcattcaattttactctttgcctaatctgtg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19768271 aggctttgttcattcaattttactctttgcctaatctgtg 19768310  T

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Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 64 - 236
Target Start/End: Original strand, 29199652 - 29199821
Alignment:
Q  64 tgaggaagctttttcttcgtggttgtcagtgtctgttatgctgcattatgtgttttgttcatgtaagnnnnnnncctccgctgctacttcaaattcaggt 163  Q
    ||||| |||||||||||||||| |||| |||| |||||||||||||||||||||||||| |||||||       ||||   ||||||||||||||||||     
T  29199652 tgagggagctttttcttcgtggctgtcggtgtgtgttatgctgcattatgtgttttgtttatgtaagtttttttcctc---tgctacttcaaattcaggc 29199748  T
Q  164 ctgccttcgatgtttctgtttagccattttgtgcgataggctttgttcattcaattttactctttgcctaatc 236  Q
    |||| |||||||||||||||||||||||||||  |||| |||||||||||| ||||||||||||||| |||||    
T  29199749 ctgctttcgatgtttctgtttagccattttgtaggatatgctttgttcatttaattttactctttgcgtaatc 29199821  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 12572455 - 12572307
Alignment:
Q  88 gtcagtgtctgttatgctgcattatgtgttttgttcatgtaagnnnnnnncctccgctgctacttcaaattcaggtctgccttcgatgtttctgtttagc 187  Q
    |||||||| ||||| || ||||| ||||||||||| |||||||       ||| |||||||||||||||||||||||||||||| || ||||| ||||||    
T  12572455 gtcagtgtgtgttacgcggcattgtgtgttttgtttatgtaagttttttgcctgcgctgctacttcaaattcaggtctgccttcaatttttctttttagc 12572356  T
Q  188 cattttgtgcgataggctttgttcattcaattttactctttgcctaatc 236  Q
    ||||||||   |||  ||||||| ||||||||||| |||||||| ||||    
T  12572355 cattttgtatcatatactttgttgattcaattttaatctttgcccaatc 12572307  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 13548919 - 13548771
Alignment:
Q  88 gtcagtgtctgttatgctgcattatgtgttttgttcatgtaagnnnnnnncctccgctgctacttcaaattcaggtctgccttcgatgtttctgtttagc 187  Q
    |||||||| ||||| || ||||| ||||||||||| |||||||       ||| |||||||||||||||||||||||||||||| || ||||| ||||||    
T  13548919 gtcagtgtgtgttacgcggcattgtgtgttttgtttatgtaagttttttgcctgcgctgctacttcaaattcaggtctgccttcaatttttctttttagc 13548820  T
Q  188 cattttgtgcgataggctttgttcattcaattttactctttgcctaatc 236  Q
    ||||||||   |||  ||||||| ||||||||||| |||||||| ||||    
T  13548819 cattttgtatcatatactttgttgattcaattttaatctttgcccaatc 13548771  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 45456394 - 45456360
Alignment:
Q  1 tcgtatttgaattaagaagacttaagtttatatgt 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  45456394 tcgtatttgaattaagaatacttaagtttatatgt 45456360  T

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Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 22082764 - 22083003
Alignment:
Q  1 tcgtatttgaattaagaagacttaagtttatatgtccaagaattaagtttatatgttcggacatgaggaagctttttcttcgtggttgtcagtgtctgtt 100  Q
    ||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||||||||| ||||    
T  22082764 tcgtagttgaattaagaagacttaagcttatatgtccaagacttaagcttatatgttcggacatgagggagctttttcttcgtggctgtcagtgtgtgtt 22082863  T
Q  101 atgctgcattatgtgttttgttcatgtaagnnnnnnncctccgctgctacttcaaattcaggtctgccttcgatgtttctgtttagccattttgtgcgat 200  Q
    || ||||||||||||||||||| |||||||        ||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||    
T  22082864 atactgcattatgtgttttgtttatgtaagttttttttctccgctgctacttcaaattcaggtatgccttcaatgtttctgttttgccattttgtgcgat 22082963  T
Q  201 aggctttgttcattcaattttactctttgcctaatctgtg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22082964 aggctttgttcattcaattttactctttgcctaatctgtg 22083003  T

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Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 37617211 - 37616977
Alignment:
Q  1 tcgtatttgaattaagaagacttaagtttatatgtccaagaattaagtttatatgttcggacatgaggaagctttttcttcgtggttgtcagtgtctgtt 100  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| |||||| || ||||    
T  37617211 tcgtatttgaattaagaagacttaagcttatatgtccaagacttaagcttatatgttcggacatgagggagctttttcttcgtggctgtcagcgtgtgtt 37617112  T
Q  101 atgctgcattatgtgttttgttcatgtaagnnnnnnncctccgctgctacttcaaattcaggtctgccttcgatgtttctgtttagccattttgtgcgat 200  Q
    || ||||||||||||||||||| |||||||       |||||||||||||||||     |||||||||||| ||||||||||||||||||||||||||||    
T  37617111 atactgcattatgtgttttgtttatgtaagtttttttcctccgctgctacttca-----aggtctgccttcaatgtttctgtttagccattttgtgcgat 37617017  T
Q  201 aggctttgttcattcaattttactctttgcctaatctgtg 240  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  37617016 aggcttttttcattcaattttactctttgcctaatttgtg 37616977  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 73 - 236
Target Start/End: Original strand, 4351630 - 4351793
Alignment:
Q  73 tttttcttcgtggttgtcagtgtctgttatgctgcattatgtgttttgttcatgtaagnnnnnnncctccgctgctacttcaaattcaggtctgccttcg 172  Q
    ||||| |||||||  |||||||| ||||| || ||||| | ||||||||| |||||||       ||| ||||||||||||||||| |||||||||||||    
T  4351630 ttttttttcgtggcagtcagtgtgtgttacgcggcattgtttgttttgtttatgtaagttttgttcctgcgctgctacttcaaatttaggtctgccttcg 4351729  T
Q  173 atgtttctgtttagccattttgtgcgataggctttgttcattcaattttactctttgcctaatc 236  Q
    || ||||| ||||||||||||||   |||  ||||||| ||||||||||| |||||||| ||||    
T  4351730 atttttctttttagccattttgtatcatatactttgttgattcaattttaatctttgcccaatc 4351793  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 40164874 - 40164908
Alignment:
Q  1 tcgtatttgaattaagaagacttaagtttatatgt 35  Q
    |||||||||||||||||||||||||||||||||||    
T  40164874 tcgtatttgaattaagaagacttaagtttatatgt 40164908  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 142 - 221
Target Start/End: Complemental strand, 51389734 - 51389655
Alignment:
Q  142 cgctgctacttcaaattcaggtctgccttcgatgtttctgtttagccattttgtgcgataggctttgttcattcaatttt 221  Q
    |||||||||||||| |||| ||||||||| | ||||||||||||||| ||||||||||||| |||||||| |||||||||    
T  51389734 cgctgctacttcaatttcaagtctgcctttggtgtttctgtttagccgttttgtgcgatagactttgttcgttcaatttt 51389655  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6921715 - 6921749
Alignment:
Q  1 tcgtatttgaattaagaagacttaagtttatatgt 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  6921715 tcgtatttgaattaagaatacttaagtttatatgt 6921749  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 38238163 - 38238129
Alignment:
Q  1 tcgtatttgaattaagaagacttaagtttatatgt 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  38238163 tcgtatttgaattaagaatacttaagtttatatgt 38238129  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 770338 - 770428
Alignment:
Q  143 gctgctacttcaaattcaggtctgccttcgatgtttctgtttagccattttgtgcgataggctttgttcattcaattttactctttgcctaatc 236  Q
    ||||||||||||| ||||  |||||||| | ||||||||||||||| ||   | |||||| ||||||  ||||||||||||| |||||||||||    
T  770338 gctgctacttcaatttcaattctgcctttggtgtttctgtttagccgtt---tacgatagactttgtctattcaattttactatttgcctaatc 770428  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 7827645 - 7827613
Alignment:
Q  3 gtatttgaattaagaagacttaagtttatatgt 35  Q
    |||||||||||||||||||||||||||||||||    
T  7827645 gtatttgaattaagaagacttaagtttatatgt 7827613  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 32662957 - 32663038
Alignment:
Q  147 ctacttcaaattcaggtctgccttcgatgtttctgtttagccattttgtgcgataggctttgttcattcaattttactcttt 228  Q
    ||||||||  |||| || |||||| | ||||  ||||||||| |||||| ||||||  |||||||||||| |||||||||||    
T  32662957 ctacttcagtttcaagtttgcctttggtgttaatgtttagccgttttgtacgatagagtttgttcattcagttttactcttt 32663038  T

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