View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_81 (Length: 258)
Name: NF9879_low_81
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_81 |
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| [»] scaffold0094 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 31242758 - 31242525
Alignment:
| Q |
18 |
aactactaatcgtgcctagtactaacacaagattcaatgtgcatgtgtttattgaattgttctaatacctaatttactttttagtttggtggtcgtaatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31242758 |
aactactaatcgtgcctagtactaacacaagattcaatgtgcatgtgtttattgaattgttctaatacctaatttactttttagtttggtggtcgtaatg |
31242659 |
T |
|
| Q |
118 |
ctgaacaaaatggtgaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31242658 |
ctgaacaaaatggtgaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcacaacctgagacattgcaggtacg |
31242559 |
T |
|
| Q |
218 |
taggaggatttaaatgaatgttctatctctgctt |
251 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
31242558 |
taggaggatttaaatgaatgttctatctctgctt |
31242525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 17215749 - 17215973
Alignment:
| Q |
18 |
aactactaatcgtgcctagtactaacacaagattcaatgtgcatgtgtttattgaattgttctaatacctaatttactttttagtttggtggtcgtaatg |
117 |
Q |
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||||||| |||||||||||||||| | || || |||||||||||| ||| ||| ||| |||||||| ||| |||| ||||||||||||||||||||||| |
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| T |
17215749 |
aactacttttcgtgcctagtactaatataaaatgcaatgtgcatgtatttcttgtattcttctaatatctattttaatttttagtttggtggtcgtaatg |
17215848 |
T |
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| Q |
118 |
ctgaacaaaatggtgaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacg |
217 |
Q |
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| T |
17215849 |
gtgaagaaaatggcaaggctgatttaagttttctcagagaagagattcaaaatctaggattcctttatttatcttcacaacctgagacattac----atg |
17215944 |
T |
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| Q |
218 |
taggaggatttaaatgaatgttctatctc |
246 |
Q |
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||| |||| |||||||||||||||||||| |
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| T |
17215945 |
tagaaggacttaaatgaatgttctatctc |
17215973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 28 - 246
Target Start/End: Complemental strand, 17214740 - 17214528
Alignment:
| Q |
28 |
cgtgcctagtactaacacaagattcaatgtgcatgtgtttattgaattgttctaatacctaatttactttttagtttggtggtcgtaatgctgaacaaaa |
127 |
Q |
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||||| |||||||||||||| || |||| ||||||| ||| ||| ||| |||||||| ||| ||||||||| ||||||||||| |||||| |||| |||| |
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| T |
17214740 |
cgtgcttagtactaacacaaaatgcaatctgcatgtatttcttgtattcttctaatatctattttactttt-agtttggtggt-gtaatggtgaagaaaa |
17214643 |
T |
|
| Q |
128 |
tggtgaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgtaggaggatt |
227 |
Q |
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||| ||| |||||||||||| ||||||||||||||||||||||||| ||||||| | ||| |||| |||||||||||||||||||| | | |||| |
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| T |
17214642 |
tggcaaggatgatttaagtttactcagagaagagattcaaaatccaggattcctttgtttgtcttcacaacctgagacattgcaggta----gaatgatt |
17214547 |
T |
|
| Q |
228 |
taaatgaatgttctatctc |
246 |
Q |
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||||||||||||||||||| |
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| T |
17214546 |
taaatgaatgttctatctc |
17214528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 30 - 245
Target Start/End: Original strand, 10441 - 10652
Alignment:
| Q |
30 |
tgcctagtactaacacaagattcaatgtgcatgtgtttattgaattgttctaatacctaatttactttttagtttggtggtcgtaatgctgaacaaaatg |
129 |
Q |
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||||||||| |||||||| || |||||||||||| ||| ||| ||| | |||||| ||| |||||||||| | || |||||||||| |||| |||||| |
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| T |
10441 |
tgcctagtattaacacaaaatgcaatgtgcatgtatttcttgtattctcctaatatctattttacttttttgatttaaggtcgtaatggtgaagaaaatg |
10540 |
T |
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| Q |
130 |
gtgaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgtaggaggattta |
229 |
Q |
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| T |
10541 |
gcaaggctgatttaagttttcttagagaagagattcaaaattcaggattcctttgtttgtcttcacaaccttagatattgcaagtac----aaggattta |
10636 |
T |
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| Q |
230 |
aatgaatgttctatct |
245 |
Q |
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|||||||||||||||| |
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| T |
10637 |
aatgaatgttctatct |
10652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 30 - 246
Target Start/End: Complemental strand, 9439 - 9227
Alignment:
| Q |
30 |
tgcctagtactaacacaagattcaatgtgcatgtgtttattgaattgttctaatacctaatttactttttagtttggtggtcgtaatgctgaacaaaatg |
129 |
Q |
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||||||||| |||||||| || |||||||||||| ||| ||| ||| | |||||| ||| |||||||||| | || |||||||||| |||| |||||| |
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| T |
9439 |
tgcctagtattaacacaaaatgcaatgtgcatgtatttcttgtattctcctaatatctattttacttttttgatttaaggtcgtaatggtgaagaaaatg |
9340 |
T |
|
| Q |
130 |
gtgaggctgatttaagttttctcagagaagagattcaaaatccagatttcctttctctgtattcaaaacctgagacattgcaggtacgtaggaggattta |
229 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||| || ||||||| | | | |||| | ||| ||||||||||||||| || ||||| |
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| T |
9339 |
gcaaggctgatttaagttttctcagagaagagattcaaaatctaggattcctttgtttcttttcacagcctaagacattgcaggtac----aagtattta |
9244 |
T |
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| Q |
230 |
aatgaatgttctatctc |
246 |
Q |
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||| ||||||||||||| |
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| T |
9243 |
aattaatgttctatctc |
9227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 7206234 - 7206155
Alignment:
| Q |
100 |
agtttggtggtcgtaatgctgaacaaaatggtgaggctgatttaagttttctcagagaagagattcaaaatccagatttc |
179 |
Q |
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|||||| |||||||| || |||||||||||| ||||||||||| ||||||| |||||||||||||||||| |||||| |
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| T |
7206234 |
agtttgatggtcgtattggtgaacaaaatggcaaggctgatttatgttttcttcaagaagagattcaaaatccggatttc |
7206155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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