View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_82 (Length: 255)
Name: NF9879_low_82
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_82 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 2789658 - 2789899
Alignment:
| Q |
1 |
tccaagctacaatattatgtaagttctattgaaaagagtgagcaaccaagagtgccttattgattgtttgttgatttgacaggaagttgctgacaatctt |
100 |
Q |
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| T |
2789658 |
tccaagctacaatatcatgtaagttctattgaagagagtgagcgaccaagagtgccttattgattgtttgttgatttgacaggaagttgttgacaatctt |
2789757 |
T |
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| Q |
101 |
tccatggaacttccaaaggctgtttcaaagtttgctggcatttcaagttcttctttggacatggcaattagcatcattgatcagtttatagtgaaatgtg |
200 |
Q |
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| T |
2789758 |
tccatggaactgccaaaggctgtttcaaagtttgctggcatttcaagttcttctttggacatggcaattagcatcattgatcagtttatagtgaaatgtg |
2789857 |
T |
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| Q |
201 |
gtccagagtacatgctttttgttctctgttatgtgagtctct |
242 |
Q |
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| T |
2789858 |
gtccagagtacatgctttttgttctctgttatgtgagtctct |
2789899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 2416919 - 2416795
Alignment:
| Q |
3 |
caagctacaatattatgtaagttctattgaaaagagtgagcaaccaagagtgccttattgattgtttgttgatttgacaggaagttgctgacaatctttc |
102 |
Q |
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| T |
2416919 |
caagctacaatatcatttaagttctattgaagagagtgagcaactaagagtgccttattgattgtttgttgatttgacaggaagttgttgacaatctttc |
2416820 |
T |
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| Q |
103 |
catggaacttccaaaggctgtttca |
127 |
Q |
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| T |
2416819 |
cattgaactgccaaaggctgtttca |
2416795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 126 - 242
Target Start/End: Complemental strand, 2403834 - 2403718
Alignment:
| Q |
126 |
caaagtttgctggcatttcaagttcttctttggacatggcaattagcatcattgatcagtttatagtgaaatgtggtccagagtacatgctttttgttct |
225 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||| |||| |
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| T |
2403834 |
caaagtttgctgtcatttcaagttcttctttggacatggcaattagcatcattgatcagtttatagcgaaatgtggtccaaagctcatgctttttattct |
2403735 |
T |
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| Q |
226 |
ctgttatgtgagtctct |
242 |
Q |
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| T |
2403734 |
ctgttatgtgagtctct |
2403718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 240
Target Start/End: Original strand, 4244630 - 4244798
Alignment:
| Q |
72 |
tgatttgacaggaagttgctgacaatctttccatggaacttccaaaggctgtttcaaagtttgctggcatttcaagttcttctttggacatggcaattag |
171 |
Q |
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|||||||||||||||||| ||| ||||||| | ||| | |||||||||||||||||||||||||| |||||||| | || ||||||||||||||| |
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| T |
4244630 |
tgatttgacaggaagttgttgatgctctttcctttgaagtgccaaaggctgtttcaaagtttgctggtatttcaagcaaattttcggacatggcaattag |
4244729 |
T |
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| Q |
172 |
catcattgatcagtttatagtgaaatgtggtccagagtacatgctttttgttctctgttatgtgagtct |
240 |
Q |
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||||||||||||||| |||| |||||||||||| | | ||||||| |||||||| |||||||||| |
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| T |
4244730 |
catcattgatcagttcatagcaaaatgtggtccaagggatatgctttcaattctctgtgatgtgagtct |
4244798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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