View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_83 (Length: 254)
Name: NF9879_low_83
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_83 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 25379325 - 25379139
Alignment:
| Q |
12 |
agcagagagaattcctggaagaactgagaatgcaataaagaatcattggaatgcaacaaaaaggagacaaaattcaaggagaaagaacaaaaggcctcaa |
111 |
Q |
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| T |
25379325 |
agcaaagagaattcctggaagaactgagaatgcaataaagaatcattggaatgcaacaaaaaggagacaaaattcaaggagaaagaacaaaaggcctcaa |
25379226 |
T |
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| Q |
112 |
accactgatggtaaaccacaatcttctattcttcaagactatatcaaaactttgactactcaaaaagcgttcatcagtactactgct |
198 |
Q |
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| T |
25379225 |
accactgatggtaaaccacaatcttctattcttcaagactatatcaaaactttgactactcaaaaagcgttcatcagtactactgct |
25379139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 25379115 - 25379050
Alignment:
| Q |
189 |
tactactgctactagctccgtgtcagcgatctctgaggacccttcttcaaaccaatcttcctttgt |
254 |
Q |
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| T |
25379115 |
tactactgctactagctccgtgtcagcgatctctgaggacccttcttcaaaccaatcttcctttgt |
25379050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 29671268 - 29671189
Alignment:
| Q |
22 |
attcctggaagaactgagaatgcaataaagaatcattggaatgcaacaaaaaggagacaaaattcaaggagaaagaacaa |
101 |
Q |
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| T |
29671268 |
attccaggaagaactgaaaatgccataaaaaatcattggaatgccacaaaaagaagacaaaattcaagaagaaagaacaa |
29671189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 43866521 - 43866564
Alignment:
| Q |
28 |
ggaagaactgagaatgcaataaagaatcattggaatgcaacaaa |
71 |
Q |
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| T |
43866521 |
ggaagaactgagaatgcaataaaaaaccattggaatgcaacaaa |
43866564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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