View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_low_84 (Length: 253)

Name: NF9879_low_84
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_low_84
NF9879_low_84
[»] chr6 (3 HSPs)
chr6 (127-182)||(24414328-24414383)
chr6 (178-220)||(1759099-1759141)
chr6 (200-239)||(31038975-31039014)
[»] chr7 (1 HSPs)
chr7 (100-161)||(439887-439948)
[»] chr5 (1 HSPs)
chr5 (170-240)||(31184231-31184299)
[»] chr8 (1 HSPs)
chr8 (177-214)||(14983485-14983522)


Alignment Details
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 24414328 - 24414383
Alignment:
Q  127 tcaaaccgatacaattaatagatggaaggaagaaatcttcaattcttcactaacaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24414328 tcaaaccgatacaattaatagatggaaggaagaaatcttcaattctgcactaacaa 24414383  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 1759141 - 1759099
Alignment:
Q  178 aacaaacacactaacatttcaattctaaaacctaacattacaa 220  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  1759141 aacaaatacactaacatttcaatcctaaaacctaacattacaa 1759099  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 31039014 - 31038975
Alignment:
Q  200 ttctaaaacctaacattacaagtattcaattaaaaattca 239  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  31039014 ttctaaaacctaacattacaagtattcaattttaaattca 31038975  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 439887 - 439948
Alignment:
Q  100 tcacactgctttctctcttttagcttctcaaaccgatacaattaatagatggaaggaagaaa 161  Q
    |||||||  ||||||||||||||||||||||||| || ||||||| ||||||||||||||||    
T  439887 tcacactaatttctctcttttagcttctcaaaccaattcaattaacagatggaaggaagaaa 439948  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 31184299 - 31184231
Alignment:
Q  170 tcttcactaacaaacacactaacatttcaattctaaaacctaacattacaagtattcaattaaaaattcag 240  Q
    |||||| ||||||||| || ||||||||||||||||||||||  || ||||||||| ||||||||||||||    
T  31184299 tcttcattaacaaacaaacaaacatttcaattctaaaaccta--ataacaagtattgaattaaaaattcag 31184231  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 214
Target Start/End: Original strand, 14983485 - 14983522
Alignment:
Q  177 taacaaacacactaacatttcaattctaaaacctaaca 214  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  14983485 taacaaacacactaacatttcaattttaaaacctaaca 14983522  T

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