View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_86 (Length: 252)
Name: NF9879_low_86
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_86 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 2440584 - 2440819
Alignment:
| Q |
1 |
gccgattgggttaggatttaggaacaaagacggaacaccaagaaaacttcactctactgacctgacacccattgctaaagcatgggcaacatttgttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2440584 |
gccgattgggttaggatttaggaacaaagacggaacaccaagaaaacttcactctactgacctgacacccattgctaaagcatgggcaacatttgttttg |
2440683 |
T |
|
| Q |
101 |
cataccttgctcccatgttcaaatgtgtcagacttgaccattcagaaagcaaccttgttaactgcaatccttaagggtgaaccagtcaatgttggccgtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2440684 |
cataccttgctcccatgttcaaatgtgtcagacttgaccattcagaaagcaaccttgctaactgcaatccttaagggtgaaccagtcaatgttggccgtc |
2440783 |
T |
|
| Q |
201 |
tcctagcaaatgacctttgggccacagcgaacaatt |
236 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
2440784 |
tcctagtaaatgacctttgggccacagcgaacaatt |
2440819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 41656508 - 41656294
Alignment:
| Q |
18 |
ttaggaacaaagacggaacaccaagaaaacttcactctactgacctgacacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatg |
117 |
Q |
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||||||| ||||| |||||||||| ||||||| ||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||| || | |
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| T |
41656508 |
ttaggaagaaagatggaacaccaataaaacttaactcttctgacctgacacccattgctaaagcatgggaaacatttattttgcataccttgcttccgag |
41656409 |
T |
|
| Q |
118 |
ttcaaatgtgtcagacttgaccattcagaaagcaaccttgttaactgcaatccttaagggtgaaccagtcaatgttggccgtctcctagcaaatgacctt |
217 |
Q |
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||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||| |
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| T |
41656408 |
ttcaaatgtgtcagacttgccccttcagaaagcaaccttgataactgcaatccttaagggcgaaccagtcaatgtcgtccgtctcctagcaaatgacctt |
41656309 |
T |
|
| Q |
218 |
tgggccacagcgaac |
232 |
Q |
| |
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| ||||||||||||| |
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| T |
41656308 |
tcggccacagcgaac |
41656294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 41665261 - 41665055
Alignment:
| Q |
26 |
aaagacggaacaccaagaaaacttcactctactgacctgacacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatgttcaaatg |
125 |
Q |
| |
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||||| ||||||||| || ||| ||| || ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||| |
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| T |
41665261 |
aaagatggaacaccatcaagactccacacttctgacctcacacccattgctaaagcatgggcaacatttattttgcgaaccttgctcccgtgttcaaatg |
41665162 |
T |
|
| Q |
126 |
tgtcagacttgaccattcagaaagcaaccttgttaactgcaatccttaagggtgaaccagtcaatgttggccgtctcctagcaaatgacctttgggccac |
225 |
Q |
| |
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|||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||| || ||||||||||||||||| || ||||||| |
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| T |
41665161 |
tgtcagacttgaccattcagaaagcaaccttgctgactgcaattcttaagggtgaaccagtcaatgtcggtcgtctcctagcaaatgatctccgggccac |
41665062 |
T |
|
| Q |
226 |
agcgaac |
232 |
Q |
| |
|
||||||| |
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|
| T |
41665061 |
agcgaac |
41665055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 41706500 - 41706290
Alignment:
| Q |
18 |
ttaggaacaaagacggaacaccaagaaaacttcactctactgacctgacacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatg |
117 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| | || ||||||| |||||| ||||||||| |||||||| |||||||||| |||||||||||| || |
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|
| T |
41706500 |
ttaggaacaaagacggaacaccgacaaaacttcgcacttctgacctcacaccccttgctaaagtatgggcaatgtttgttttgcgtaccttgctcccgtg |
41706401 |
T |
|
| Q |
118 |
ttcaaatgtgtcagacttgaccattcagaaagcaaccttgttaactgcaatccttaagggtgaaccagtcaatgttggccgtctcctagcaaatgacctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||| | || |||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
41706400 |
ttcaaatgtgtcagacttgaccattctaaaagcaaacttgctgacagcaatccttaagggtgaaccagtcaatgttggtcgtctcctagcagatgacctt |
41706301 |
T |
|
| Q |
218 |
tgggccacagc |
228 |
Q |
| |
|
|||| |||||| |
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|
| T |
41706300 |
tgggtcacagc |
41706290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 65 - 221
Target Start/End: Complemental strand, 41648370 - 41648214
Alignment:
| Q |
65 |
acacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatgttcaaatgtgtcagacttgaccattcagaaagcaaccttgttaactg |
164 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||| || |||||||||||||||| |||||| |||||||||| |||| | |||||| | |||| |
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| T |
41648370 |
acacccattgcgaaagcatggacaacatttgttttgcatacattactcccatgttcaaatgcgtcagagttgaccattccgaaatcgaccttgctgactg |
41648271 |
T |
|
| Q |
165 |
caatccttaagggtgaaccagtcaatgttggccgtctcctagcaaatgacctttggg |
221 |
Q |
| |
|
||||||| |||||||||||| |||||||||| |||||||||||| | |||||||||| |
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|
| T |
41648270 |
caatcctgaagggtgaaccaatcaatgttggtcgtctcctagcagaagacctttggg |
41648214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 41716303 - 41716093
Alignment:
| Q |
18 |
ttaggaacaaagacggaacaccaagaaaacttcactctactgacctgacacccattgctaaagcatgggcaacatttgttttgcataccttgctcccatg |
117 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| | | |||||| || ||| ||||||||| |||||||| |||||||||| |||||||||||||| |
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| T |
41716303 |
ttaggaacaaagatggaacaccagcaaaacttcgcacgtgtgacctcactcccgttgctaaagtatgggcaatgtttgttttgcgcaccttgctcccatg |
41716204 |
T |
|
| Q |
118 |
ttcaaatgtgtcagacttgaccattcagaaagcaaccttgttaactgcaatccttaagggtgaaccagtcaatgttggccgtctcctagcaaatgacctt |
217 |
Q |
| |
|
||||||| |||||||||||||||| ||||| | ||| | |||||||||||||||||||| |||||||||||||| |||||||||||||||||| || |
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| T |
41716203 |
ttcaaatagatcagacttgaccattctaaaagctaacttactgactgcaatccttaagggtgagccagtcaatgttggtcgtctcctagcaaatgacatt |
41716104 |
T |
|
| Q |
218 |
tgggccacagc |
228 |
Q |
| |
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|||| |||||| |
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|
| T |
41716103 |
tgggtcacagc |
41716093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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