View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_low_88 (Length: 251)

Name: NF9879_low_88
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_low_88
NF9879_low_88
[»] chr4 (15 HSPs)
chr4 (6-241)||(253325-253562)
chr4 (1-228)||(5572752-5572979)
chr4 (1-228)||(5584959-5585186)
chr4 (1-230)||(5856502-5856731)
chr4 (1-165)||(3747348-3747510)
chr4 (1-144)||(5896756-5896895)
chr4 (1-207)||(5551601-5551807)
chr4 (1-235)||(5557366-5557600)
chr4 (1-235)||(5563151-5563385)
chr4 (1-144)||(5849683-5849821)
chr4 (1-178)||(5611967-5612142)
chr4 (120-232)||(5603964-5604080)
chr4 (1-144)||(5887905-5888044)
chr4 (1-207)||(5854591-5854797)
chr4 (65-144)||(5890965-5891044)
[»] chr8 (1 HSPs)
chr8 (1-207)||(1481591-1481797)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 253562 - 253325
Alignment:
Q  6 ctgaagttgagtacctgtgggaatctcccccaccaaatgattgaaggagaggttctaataaataagaaagaagggacaagcttccaagattcacaggaat 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  253562 ctgaagttgagtacctgtgggaatctcccccaccaaatgattgaaggagaggttctaataaataagaaagaagggacaagcttccaagtttcacaggaat 253463  T
Q  106 tttgctaactaaagagttatttgagaggtctaaggactc--attgtttcaagttccctatagaagacgggatttcgcctgagaccattgttagaaaagtt 203  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  253462 tttgctaactaaagagttatttgagaggtctaaggactctaattgtttcaagttccctatagaagacgggatttcgcctgagaccattgtttgaaaagtt 253363  T
Q  204 gagagcataaagttctttgaagttcattagcatctctg 241  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  253362 gagagcataaagttctttgaagtccattagcatctctg 253325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 5572979 - 5572752
Alignment:
Q  1 aatgactgaagttgagtacctgtgggaatctcccccaccaaatgattgaaggagaggttctaataaataagaaagaagggacaagcttccaagattcaca 100  Q
    ||||||||||||||||||||||| || |||| ||||||||||||||||||||| ||||||    ||||| ||||| | |||||||||| | || | ||||    
T  5572979 aatgactgaagttgagtacctgttgggatcttccccaccaaatgattgaaggaaaggttc----aaatatgaaaggaaggacaagctttctagctgcaca 5572884  T
Q  101 ggaattttgctaactaaagagttatttgagaggtctaaggactc--attgtttcaagttccctatagaagacgggatttcgcct--gagaccattgttag 196  Q
    |||||||  | |   |||| ||||||||||||||||||||||||  ||||||||||||||||||| ||||| |||||||  |||  |||||  ||||| |    
T  5572883 ggaatttcaccagtcaaagtgttatttgagaggtctaaggactccaattgtttcaagttccctatggaagatgggattttacctgagagacggttgtttg 5572784  T
Q  197 aaaagttgagagcataaagttctttgaagttc 228  Q
    ||| |||||||   |||||| |||||||||||    
T  5572783 aaatgttgagaatgtaaagtgctttgaagttc 5572752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 5585186 - 5584959
Alignment:
Q  1 aatgactgaagttgagtacctgtgggaatctcccccaccaaatgattgaaggagaggttctaataaataagaaagaagggacaagcttccaagattcaca 100  Q
    ||||||||||||||||||||||| || |||| ||||||||||||||||||||| ||||||    ||||| ||||| | |||||||||| | || | ||||    
T  5585186 aatgactgaagttgagtacctgttgggatcttccccaccaaatgattgaaggaaaggttc----aaatatgaaaggaaggacaagctttctagctgcaca 5585091  T
Q  101 ggaattttgctaactaaagagttatttgagaggtctaaggactc--attgtttcaagttccctatagaagacgggatttcgcct--gagaccattgttag 196  Q
    |||||||  | |   |||| ||||||||||||||||||||||||  ||||||||||||||||||| ||||| |||||||  |||  |||||  ||||| |    
T  5585090 ggaatttcaccagtcaaagtgttatttgagaggtctaaggactccaattgtttcaagttccctatggaagatgggattttacctgagagacggttgtttg 5584991  T
Q  197 aaaagttgagagcataaagttctttgaagttc 228  Q
    ||| |||||||   |||||| |||||||||||    
T  5584990 aaatgttgagaatgtaaagtgctttgaagttc 5584959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 5856502 - 5856731
Alignment:
Q  1 aatgactgaagttgagtacctgtgggaatctcccccaccaaatgattgaaggagaggttctaataaataagaaagaagggacaagcttccaagattcaca 100  Q
    ||||||||||||||||| ||||| ||||||| |||| | ||||||||||| |||||||||    || |||||||| |  ||||  ||| |||| | ||      
T  5856502 aatgactgaagttgagtgcctgttggaatcttccccgcgaaatgattgaatgagaggttc----aagtaagaaaggaatgacagacttgcaagttgcatg 5856597  T
Q  101 ggaattttgctaactaaagagttatttgagaggtctaaggactc--attgtttcaagttccctatagaagacgggatttcgcctgaga--ccattgttag 196  Q
    |||||||  | ||  ||||||||||||||||||||||| |||||  | ||||||||||| || |||||||| |||||||| |||||||  | |||||| |    
T  5856598 ggaatttcaccaatcaaagagttatttgagaggtctaatgactccaactgtttcaagtttccaatagaagatgggatttcacctgagagacaattgtttg 5856697  T
Q  197 aaaagttgagagcataaagttctttgaagttcat 230  Q
    ||||||||||| ||| |||| |||||||||||||    
T  5856698 aaaagttgagaacatgaagtgctttgaagttcat 5856731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 3747348 - 3747510
Alignment:
Q  1 aatgactgaagttgagtacctgtgggaatctcccccaccaaatgattgaaggagaggttctaataaataagaaagaagggacaagcttccaagattcaca 100  Q
    |||||||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||    ||||| ||||| | |||||||||  |||| | ||      
T  3747348 aatgactgaagttgcgtacctgttggaatcttcccaaccaaatgattgaaggagaggttc----aaatatgaaaggaaggacaagctggcaagttgcatg 3747443  T
Q  101 ggaattttgctaactaaagagttatttgagaggtctaaggactc--attgtttcaagttccctatag 165  Q
    |||||||  | ||| || ||||||||||||||||| ||||||||  | ||||||||||| |||||||    
T  3747444 ggaatttcaccaaccaatgagttatttgagaggtccaaggactctaactgtttcaagtttcctatag 3747510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 5896895 - 5896756
Alignment:
Q  1 aatgactgaagttgagtacctgtgggaatctcccccaccaaatgattgaaggagaggttctaataaataagaaagaagggacaagcttccaagattcaca 100  Q
    |||||||||||||| |||||||| ||||||| ||||||||||||||||| ||| ||||||    ||||||||||| |  ||||| ||| |||| | |||     
T  5896895 aatgactgaagttgggtacctgttggaatcttccccaccaaatgattgagggataggttc----aaataagaaaggaatgacaaacttgcaagttgcacc 5896800  T
Q  101 ggaattttgctaactaaagagttatttgagaggtctaaggactc 144  Q
    |||||||  | ||| |||||||||||||||||||| ||||||||    
T  5896799 ggaatttcaccaaccaaagagttatttgagaggtccaaggactc 5896756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 5551601 - 5551807
Alignment:
Q  1 aatgactgaagttgagtacctgtgggaatctcccccaccaaatgattgaaggagaggttctaataaataagaaagaagggacaagcttccaagattcaca 100  Q
    ||||||||||||||||||||||| || ||||  || ||||||||||||||||| ||||||    ||||||||||| |  || |||||| |||| | ||||    
T  5551601 aatgactgaagttgagtacctgtagggatctttccaaccaaatgattgaaggaaaggttc----aaataagaaaggaatgataagcttgcaagttgcaca 5551696  T
Q  101 ggaattttgctaactaaagagttatttgagaggtctaaggactc--attgtttcaagttccctatagaagacgggatttcgcctgag--accattgttag 196  Q
    || |||   | ||| || |||||||||||||||||||| |||||  | ||||||| |||||| ||||  || |||||||| || |||  ||||||||| |    
T  5551697 ggtattacaccaaccaaggagttatttgagaggtctaatgactctaactgtttcaggttcccaatagttgatgggatttcaccggagataccattgttcg 5551796  T
Q  197 aaaagttgaga 207  Q
    |||||||||||    
T  5551797 aaaagttgaga 5551807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 5557366 - 5557600
Alignment:
Q  1 aatgactgaagttgagtacctgtgggaatctcccccaccaaatgattgaaggagaggttctaataaataagaaagaagggacaagcttccaagattcaca 100  Q
    |||||||||||||| |||||||| || |||  ||| || |||||||||||||||||||||    ||||||||||| |  |||| |||| |||| | |||     
T  5557366 aatgactgaagttgggtacctgttgggatcatcccaactaaatgattgaaggagaggttc----aaataagaaaggaatgacatgcttgcaagttgcact 5557461  T
Q  101 ggaattttgctaactaaagagttatttgagaggtctaaggactc--attgtttcaagttccctatagaagacgggatttcgcc--tgagaccattgttag 196  Q
    |||||||  | ||| || ||||||||||||||||| ||||||||  | ||||||| |||||| ||||  || |||||||| ||   |||| ||||||| |    
T  5557462 ggaatttcaccaaccaatgagttatttgagaggtccaaggactccaactgtttcaggttcccaatagttgatgggatttcaccagagagagcattgtttg 5557561  T
Q  197 aaaagttgagagcataaagttctttgaagttcattagca 235  Q
    ||||||||||| |||  | | ||||||||| ||||||||    
T  5557562 aaaagttgagaacatggattgctttgaagtccattagca 5557600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 5563151 - 5563385
Alignment:
Q  1 aatgactgaagttgagtacctgtgggaatctcccccaccaaatgattgaaggagaggttctaataaataagaaagaagggacaagcttccaagattcaca 100  Q
    ||||| |||||||| |||||||| || |||| ||||||||||||||||| ||| ||||||    ||  ||||||| |  |||| |||| |||  | ||||    
T  5563151 aatgattgaagttgggtacctgttgggatcttccccaccaaatgattgatggaaaggttc----aagaaagaaaggaatgacaggcttgcaatctgcaca 5563246  T
Q  101 ggaattttgctaactaaagagttatttgagaggtctaaggactc--attgtttcaagttccctatagaagacgggatttcgcc--tgagaccattgttag 196  Q
    ||||| || | ||| | |||||||||||||||||| ||||||||  | ||||||| |||||| ||||  || || ||||| ||   |||| ||||||| |    
T  5563247 ggaatcttaccaaccagagagttatttgagaggtccaaggactccaactgtttcaggttcccgatagttgatggaatttcaccagagagagcattgtttg 5563346  T
Q  197 aaaagttgagagcataaagttctttgaagttcattagca 235  Q
    ||||||||||| |||||||| ||||||||| ||| ||||    
T  5563347 aaaagttgagaacataaagtgctttgaagtccatcagca 5563385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 5849821 - 5849683
Alignment:
Q  1 aatgactgaagttgagtacctgtgggaatctcccccaccaaatgattgaaggagaggttctaataaataagaaagaagggacaagcttccaagattcaca 100  Q
    |||||||||||||| |||||||| || |||| ||||||||||||||||||||| ||||||    ||||||||||| | | ||||| || |||  | ||||    
T  5849821 aatgactgaagttgggtacctgttgggatcttccccaccaaatgattgaaggataggttc----aaataagaaaggaagaacaagtttgcaaactgcaca 5849726  T
Q  101 ggaattttgctaactaaagagttatttgagaggtctaaggactc 144  Q
    |||| ||  | ||| |||||||||||||||||||| ||||||||    
T  5849725 ggaa-ttcaccaaccaaagagttatttgagaggtccaaggactc 5849683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 5611967 - 5612142
Alignment:
Q  1 aatgactgaagttgagtacctgtgggaatctcccccaccaaatgattgaaggagaggttctaataaataagaaagaagggacaagcttccaagattcaca 100  Q
    ||||||||||||||||||||||| || |||| ||| ||||||||||||||||| || |||    ||||||||||| |  |||| |||| |||| | || |    
T  5611967 aatgactgaagttgagtacctgttgggatcttcccaaccaaatgattgaaggaaagtttc----aaataagaaaggaatgacatgcttgcaagttgcaga 5612062  T
Q  101 ggaattttgctaactaaagagttatttgagaggtctaaggactc--attgtttcaagttccctatagaagacgggatttc 178  Q
    |||||||  | ||| || ||||| ||||||| ||| ||||||||  | ||||||| |||||| ||||  || ||||||||    
T  5612063 ggaatttcaccaaccaaggagttgtttgagaagtccaaggactctaactgtttcaggttcccaatagttgatgggatttc 5612142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 5603964 - 5604080
Alignment:
Q  120 agttatttgagaggtctaaggactc--attgtttcaagttccctatagaagacgggatttcgcct--gagaccattgttagaaaagttgagagcataaag 215  Q
    |||||||||||||||| || |||||  | ||||||| |||||| | ||  || |||||||| ||   |||||||||||| |||||||||||| |||||||    
T  5603964 agttatttgagaggtccaaagactccaactgtttcaggttcccaacagttgatgggatttcaccatagagaccattgtttgaaaagttgagaacataaag 5604063  T
Q  216 ttctttgaagttcatta 232  Q
    | ||||||||| |||||    
T  5604064 tgctttgaagtccatta 5604080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 5888044 - 5887905
Alignment:
Q  1 aatgactgaagttgagtacctgtgggaatctcccccaccaaatgattgaaggagaggttctaataaataagaaagaagggacaagcttccaagattcaca 100  Q
    |||||||||||||| |||||||| || |||| ||| |||||||||||||| || ||||||    |||||| |||| |  |||| |||| |||| | || |    
T  5888044 aatgactgaagttgggtacctgttgggatcttcccaaccaaatgattgaacgaaaggttc----aaataacaaaggaatgacatgcttgcaagttgcaga 5887949  T
Q  101 ggaattttgctaactaaagagttatttgagaggtctaaggactc 144  Q
    |||||||  | ||| || ||||| ||||||||||| ||||||||    
T  5887948 ggaatttcaccaaccaaggagttgtttgagaggtccaaggactc 5887905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 5854797 - 5854591
Alignment:
Q  1 aatgactgaagttgagtacctgtgggaatctcccccaccaaatgattgaaggagaggttctaataaataagaaagaagggacaagcttccaagattcaca 100  Q
    ||||||||||||||||| ||||| || ||||  || ||||||| ||||||||| ||||||    |||||||| || |   |||||||| | || | ||||    
T  5854797 aatgactgaagttgagttcctgtcgggatctttccaaccaaataattgaaggaaaggttc----aaataagagaggaacaacaagcttgccagttgcaca 5854702  T
Q  101 ggaattttgctaactaaagagttatttgagaggtctaaggactc--attgtttcaagttccctatagaagacgggatttcgcctgag--accattgttag 196  Q
    || |||   | ||| || |||||||||||||||||||| |||||  | ||||||| |||||| ||||  || |||||||| || |||  | ||||||| |    
T  5854701 ggtattacaccaaccaaggagttatttgagaggtctaatgactctaactgtttcaggttcccgatagttgatgggatttcaccagagaaagcattgtttg 5854602  T
Q  197 aaaagttgaga 207  Q
    |||||||||||    
T  5854601 aaaagttgaga 5854591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 5891044 - 5890965
Alignment:
Q  65 aaataagaaagaagggacaagcttccaagattcacaggaattttgctaactaaagagttatttgagaggtctaaggactc 144  Q
    ||||||||||| |  |||| |||| |||| | |||||||||||  | ||| |||||||||||||||||||| ||||||||    
T  5891044 aaataagaaaggaatgacatgcttgcaagctgcacaggaatttcaccaaccaaagagttatttgagaggtccaaggactc 5890965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 1481591 - 1481797
Alignment:
Q  1 aatgactgaagttgagtacctgtgggaatctcccccaccaaatgattgaaggagaggttctaataaataagaaagaagggacaagcttccaagattcaca 100  Q
    ||||||||||||||||||||||| ||||||  ||| |||||||||||||| |||||||||    |||||||||||||  |||| || | |||  | ||||    
T  1481591 aatgactgaagttgagtacctgttggaatcatccctaccaaatgattgaaagagaggttc----aaataagaaagaaatgacatgcatacaatctgcaca 1481686  T
Q  101 ggaattttgctaactaaagagttatttgagaggtctaaggactc--attgtttcaagttccctatagaagacgggatttcgcctgag--accattgttag 196  Q
    |||||||| |  |  |||||||||||||||||||||||||||||  | ||||||| |||||| ||||  || |||||||| || |||  | ||||||| |    
T  1481687 ggaattttaccgaacaaagagttatttgagaggtctaaggactctaactgtttcaggttcccaatagtcgatgggatttcaccggagaaagcattgtttg 1481786  T
Q  197 aaaagttgaga 207  Q
    |||||||||||    
T  1481787 aaaagttgaga 1481797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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