View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_90 (Length: 250)
Name: NF9879_low_90
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_90 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 14925929 - 14926168
Alignment:
| Q |
1 |
tttaaatgaaacaaatatatatgtttttcattattttcttaaaatgtattcatcnnnnnnncgaacactgagtatagtttaaaactttatacttcttaga |
100 |
Q |
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| T |
14925929 |
tttaaatgaaacaaatatatatgtttttcattattttcttaaaatgtattcatcaaaaaaacaaacactgagtatagtttaaaactttatacttcttaga |
14926028 |
T |
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| Q |
101 |
atatcacattggcgcaccacatgatattattgggttcttcactcttcctcattaatttttcattagttattaaattgaaagatcactttcatgatggaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14926029 |
atatcacattggcgcaccacatgatattattgggttctttactcttcctcattaatttttcattagttattaaattgaaagatcactttcatgatggaat |
14926128 |
T |
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| Q |
201 |
acaaaagttacttgtgtactgtacccaaatgttatctctg |
240 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |
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| T |
14926129 |
acaaaggttacttgtgtactgtacccaaatgttatctctg |
14926168 |
T |
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