View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9879_low_95 (Length: 249)

Name: NF9879_low_95
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9879_low_95
NF9879_low_95
[»] chr7 (3 HSPs)
chr7 (1-245)||(33853531-33853775)
chr7 (66-131)||(45004961-45005027)
chr7 (127-179)||(44365715-44365767)
[»] chr3 (4 HSPs)
chr3 (66-179)||(52925689-52925803)
chr3 (18-175)||(39256572-39256730)
chr3 (22-90)||(40147885-40147952)
chr3 (115-179)||(51285452-51285516)
[»] chr2 (1 HSPs)
chr2 (18-179)||(3476460-3476624)
[»] chr6 (7 HSPs)
chr6 (21-142)||(1485180-1485302)
chr6 (18-148)||(30926809-30926940)
chr6 (5-96)||(34620863-34620954)
chr6 (5-96)||(34748300-34748391)
chr6 (18-88)||(10874479-10874548)
chr6 (98-148)||(33136594-33136644)
chr6 (37-93)||(6544548-6544604)
[»] chr5 (1 HSPs)
chr5 (109-182)||(10859943-10860016)
[»] chr8 (1 HSPs)
chr8 (109-150)||(8252719-8252760)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 33853531 - 33853775
Alignment:
Q  1 aaataaataaattttgagtaaaaatcaattcaagaatcaaaagctccgcttactagcttaatgtaagaatcaattctgaaggcaaaatgaattctaccga 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  33853531 aaataaatgaattttgagtaaaaatcaattcaagaatcaaaagctccgcttactagcttaatgtaagaatcaattctggaggcaaaatgaattctactga 33853630  T
Q  101 gagcaattaaacacgtcaaaatcagttatacacctctagaatgaatttcgacttatccaatagtggaaccgaacatacatgtgagtggctgtgaacatta 200  Q
    ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33853631 gagcaattaaacatgtcgaaatcaattatacacctctagaatgaatttcgacttatccaatagtggaaccgaacatacatgtgagtggctgtgaacatta 33853730  T
Q  201 tagaattgctttttgaatctcaacatcgattccgtctctgcttct 245  Q
    ||||||||||||||||||||||||||||||||||| | |||||||    
T  33853731 tagaattgctttttgaatctcaacatcgattccgtttttgcttct 33853775  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 45005027 - 45004961
Alignment:
Q  66 agaatcaattctgaaggcaaaatgaattcta-ccgagagcaattaaacacgtcaaaatcagttatac 131  Q
    ||||||||||||||||||||||| |||||||  |||||||||  ||||| |||||||||| ||||||    
T  45005027 agaatcaattctgaaggcaaaatcaattctattcgagagcaaccaaacatgtcaaaatcaattatac 45004961  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 44365715 - 44365767
Alignment:
Q  127 tatacacctctagaatgaatttcgacttatccaatagtggaaccgaacataca 179  Q
    |||||||||||||||| ||||| ||||| ||||| |||||| |||||||||||    
T  44365715 tatacacctctagaatcaattttgacttctccaaaagtggagccgaacataca 44365767  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 179
Target Start/End: Original strand, 52925689 - 52925803
Alignment:
Q  66 agaatcaattctgaaggcaaaatgaattctacc-gagagcaattaaacacgtcaaaatcagttatacacctctagaatgaatttcgacttatccaatagt 164  Q
    ||||||| || || |||||||||  |||||||  ||||||||  ||||| |||||||||| ||||||||||||||||| ||||| ||||  ||||| |||    
T  52925689 agaatcagttatggaggcaaaattgattctacgtgagagcaaccaaacatgtcaaaatcaattatacacctctagaatcaattttgactcctccaaaagt 52925788  T
Q  165 ggaaccgaacataca 179  Q
    |||||||||||||||    
T  52925789 ggaaccgaacataca 52925803  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 39256730 - 39256572
Alignment:
Q  18 gtaaaaatcaattcaagaatcaaaagctccgcttactagcttaatgtaagaatcaattctgaaggcaaaatgaattctacc-gagagcaattaaacacgt 116  Q
    |||||||||||||  ||||| |||||||||  || ||  ||| | || |||| ||||| || || |||| | ||||||||  ||||| ||| ||||| ||    
T  39256730 gtaaaaatcaattttagaattaaaagctccagtttcttccttcaagtcagaaacaattttggagtcaaagtcaattctacttgagagtaatcaaacatgt 39256631  T
Q  117 caaaatcagttatacacctctagaatgaatttcgacttatccaatagtggaaccgaaca 175  Q
    |||||||| || |||||||||||||  ||||| || || ||||| ||||||||| ||||    
T  39256630 caaaatcaattctacacctctagaactaattttgatttctccaaaagtggaaccaaaca 39256572  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 40147885 - 40147952
Alignment:
Q  22 aaatcaattcaagaatcaaaagctccgcttactagcttaatgtaagaatcaattctgaaggcaaaatga 90  Q
    |||||||||| |||||||||||||||   | ||||||| | || |||||||||||||||| ||||||||    
T  40147885 aaatcaattctagaatcaaaagctccaaattctagcttgaagt-agaatcaattctgaagacaaaatga 40147952  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 51285516 - 51285452
Alignment:
Q  115 gtcaaaatcagttatacacctctagaatgaatttcgacttatccaatagtggaaccgaacataca 179  Q
    |||||||||| || |||||||||||||| ||||||| ||  || || ||||||||| ||||||||    
T  51285516 gtcaaaatcaattctacacctctagaattaatttcggctactcaaaaagtggaaccaaacataca 51285452  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 3476460 - 3476624
Alignment:
Q  18 gtaaaaatcaattcaagaatcaaaagctccgcttactagcttaatgtaagaatcaattctgaaggcaaaatgaattctac-cgagagcaattaaac--ac 114  Q
    |||||||| ||||| ||||||||||||||   ||  |||||| | || ||||||||||||| ||||||||| |||| ||| |||||||||  ||||  |     
T  3476460 gtaaaaataaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaattttactcgagagcaacgaaacatat 3476559  T
Q  115 gtcaaaatcagttatacacctctagaatgaatttcgacttatccaatagtggaaccgaacataca 179  Q
     ||||||||| || |||||||||||||| ||| ||| ||  ||||| ||||||||| ||||||||    
T  3476560 atcaaaatcaattctacacctctagaataaatatcggctcttccaaaagtggaaccaaacataca 3476624  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 1485180 - 1485302
Alignment:
Q  21 aaaatcaattcaagaatcaaaagctccgcttactagcttaatgtaagaatcaattctgaaggcaaaatgaattctac-cgagagcaattaaacacgtcaa 119  Q
    ||||||||||| |||||||||||||||  || |||| || | ||| ||||||||||| |||||||||| |||||||| | |||||||  ||||| |||||    
T  1485180 aaaatcaattctagaatcaaaagctccaatttctagattcaagta-gaatcaattctaaaggcaaaattaattctactcaagagcaaacaaacatgtcaa 1485278  T
Q  120 -aatcagttatacacctctagaat 142  Q
     ||||| || ||||||||||||||    
T  1485279 gaatcaattctacacctctagaat 1485302  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 30926809 - 30926940
Alignment:
Q  18 gtaaaaatcaattcaagaatcaaaagctccgcttactagcttaatgtaagaatcaattctgaaggcaaaatgaattctac-cgagagcaattaaacacgt 116  Q
    |||||||||||||| ||||| |||| ||||  || ||||||| | || |||||| ||||| ||| |||||  |||||||| ||||||| |  ||||| ||    
T  30926809 gtaaaaatcaattctagaataaaaaactccaatttctagcttcaagttagaatccattctaaagccaaaactaattctactcgagagcgaccaaacatgt 30926908  T
Q  117 caaaatcagttatacacctctagaatgaattt 148  Q
    ||||| || |||||||| |||||||| |||||    
T  30926909 caaaagcaattatacacttctagaatcaattt 30926940  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 34620954 - 34620863
Alignment:
Q  5 aaataaatttt-gagtaaaaatcaattcaagaatcaaaagctccgcttactagcttaatgtaagaatcaattctgaaggcaaaatgaattcta 96  Q
    ||||||||||| | |||||||||||||| ||||||| |||||  | || ||||||| |||| ||||||||||| | ||||||||| |||||||    
T  34620954 aaataaattttagtgtaaaaatcaattctagaatcagaagctatgatttctagcttcatgt-agaatcaattccggaggcaaaattaattcta 34620863  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 34748391 - 34748300
Alignment:
Q  5 aaataaatttt-gagtaaaaatcaattcaagaatcaaaagctccgcttactagcttaatgtaagaatcaattctgaaggcaaaatgaattcta 96  Q
    ||||||||||| | |||||||||||||| ||||||| |||||  | || ||||||| |||| ||||||||||| | ||||||||| |||||||    
T  34748391 aaataaattttagtgtaaaaatcaattctagaatcagaagctatgatttctagcttcatgt-agaatcaattccggaggcaaaattaattcta 34748300  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 10874548 - 10874479
Alignment:
Q  18 gtaaaaatcaattcaagaatcaaaagctccgcttactagcttaatgtaagaatcaattctgaaggcaaaat 88  Q
    |||||||||||||| ||||||||||||||   || ||||||| |||||||||  ||||||| |||||||||    
T  10874548 gtaaaaatcaattctagaatcaaaagctctaatttctagctttatgtaagaa-aaattctggaggcaaaat 10874479  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 33136594 - 33136644
Alignment:
Q  98 cgagagcaattaaacacgtcaaaatcagttatacacctctagaatgaattt 148  Q
    |||||||||  ||||| |||||||||| ||||||||||||||||| |||||    
T  33136594 cgagagcaaccaaacatgtcaaaatcaattatacacctctagaattaattt 33136644  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 6544548 - 6544604
Alignment:
Q  37 tcaaaagctccgcttactagcttaatgtaagaatcaattctgaaggcaaaatgaatt 93  Q
    ||||||||||||  | ||||||| | || ||||||||||||||||||||||| ||||    
T  6544548 tcaaaagctccgagttctagcttcaagttagaatcaattctgaaggcaaaatcaatt 6544604  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 10859943 - 10860016
Alignment:
Q  109 aaacacgtcaaaatcagttatacacctctagaatgaatttcgacttatccaatagtggaaccgaacatacatgt 182  Q
    ||||| |||||||||| || |||||||||| ||||||||| | ||  ||||| ||||||||| |||||||||||    
T  10859943 aaacaggtcaaaatcatttctacacctctataatgaattttgcctcttccaaaagtggaaccaaacatacatgt 10860016  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 8252760 - 8252719
Alignment:
Q  109 aaacacgtcaaaatcagttatacacctctagaatgaatttcg 150  Q
    ||||| ||||||||||||| |||||||||||||| |||||||    
T  8252760 aaacatgtcaaaatcagttctacacctctagaatcaatttcg 8252719  T

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