View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_98 (Length: 248)
Name: NF9879_low_98
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_98 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 37808996 - 37809210
Alignment:
| Q |
9 |
agaagcaaaggatgaaccaagagttaacctgatttgtcgtatgatatgtaggaaccgagcattataaaatgtattcctcccgcattgaaagaataatata |
108 |
Q |
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| T |
37808996 |
agaagaaaaggatgaaccaagagttaacctgatttgtcgtatgatatgtaggaaccgagcattataaaatgtattcctcccgcattgaaagaataatata |
37809095 |
T |
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| Q |
109 |
aagttgaagatgatccactctcttccgacggaaatgcaaatcgagaactataagcaacgaatgtcttgttttcagcttgttcttctatctcatgattccc |
208 |
Q |
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| T |
37809096 |
aagttgaagatgacccactctcttccgacggaaatgcaaatcgagaactataagcaacgaatgtcttgttttcagcttgttcttctatctcatgattccc |
37809195 |
T |
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| Q |
209 |
ttctactaccattac |
223 |
Q |
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||||||||||||||| |
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| T |
37809196 |
ttctactaccattac |
37809210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 37816410 - 37816623
Alignment:
| Q |
9 |
agaagcaaaggatgaaccaagagttaacctgatttgtcgtatgatatgtaggaaccgagcattataaaatgtattcctcccgcattgaaagaataatata |
108 |
Q |
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| T |
37816410 |
agaagaaaatgatgaaccaagagttaacctgatttgtcgtatgatatgtaggcaccgagcattataaaatgtattcctcctgcattgaaagaataataga |
37816509 |
T |
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| Q |
109 |
aagttgaagatgatccactctcttccgacggaaatgcaaatcgagaactataagcaacgaatgtcttgttttcagcttgttcttctatctcatgattccc |
208 |
Q |
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| T |
37816510 |
aagtggatgatgatccactctcttctgacggaaatgcaaatcgagaactataagcaacgaatgtcttgttttcagcttgttcttctatctcatgattccc |
37816609 |
T |
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| Q |
209 |
ttctactaccatta |
222 |
Q |
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| T |
37816610 |
ttccactaccatta |
37816623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 222
Target Start/End: Complemental strand, 19906911 - 19906755
Alignment:
| Q |
66 |
agcattataaaatgtattcctcccgcattgaaagaataatataaagttgaagatgatccactctcttccgacggaaatgcaaatcgagaactataagcaa |
165 |
Q |
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||||| |||||||| || || || |||||||||||||| || || || || || |||||||| ||||| || || || ||||| | ||||| ||||| | |
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| T |
19906911 |
agcataataaaatgaatgcccccagcattgaaagaatagtagaatgtggatgacgatccactttcttcagaggggaacgcaaacctggaactgtaagcca |
19906812 |
T |
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| Q |
166 |
cgaatgtcttgttttcagcttgttcttctatctcatgattcccttctactaccatta |
222 |
Q |
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| T |
19906811 |
caaatgtctggtttctagcctgtttttcaatttcatgatttccttctaccaccatta |
19906755 |
T |
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