View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9879_low_99 (Length: 248)
Name: NF9879_low_99
Description: NF9879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9879_low_99 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 45269991 - 45270219
Alignment:
| Q |
12 |
aaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatatactggcggtgtatttggta |
111 |
Q |
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| T |
45269991 |
aaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatatactggcggtgtatttggta |
45270090 |
T |
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| Q |
112 |
gcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaaaggaaaacg |
211 |
Q |
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| T |
45270091 |
gcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaaagtaacacg |
45270190 |
T |
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| Q |
212 |
tgctttcataatgtttttctggcttgttt |
240 |
Q |
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| T |
45270191 |
tgttttcatgatgtttttctggcttgttt |
45270219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 45273553 - 45273730
Alignment:
| Q |
12 |
aaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatatactggcggtgtatttggta |
111 |
Q |
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| T |
45273553 |
aaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggt------------ccagcttggagccatataccagctgtgaatttgtta |
45273640 |
T |
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| Q |
112 |
gcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgca |
201 |
Q |
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| T |
45273641 |
gcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattggcaccaggtccggtgtttgcatactctgca |
45273730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 45281797 - 45281974
Alignment:
| Q |
12 |
aaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatatactggcggtgtatttggta |
111 |
Q |
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| T |
45281797 |
aaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggt------------ccagcttggagccatataccagctgtgaatttgtta |
45281884 |
T |
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| Q |
112 |
gcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgca |
201 |
Q |
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| T |
45281885 |
gcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacattggcaccaggtccggtgtttgcatactctgca |
45281974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 226
Target Start/End: Original strand, 45293186 - 45293339
Alignment:
| Q |
73 |
ggtccagcatcgagccatatactggcggtgtatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattgg |
172 |
Q |
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|||||||| | |||||||| || || ||| |||||||||||||| |||||||||| |||| | ||||||||||||||||| |||||| |||| ||||| |
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| T |
45293186 |
ggtccagcttggagccataaaccagcagtgaatttggtagcctcggccctgctaatggcaccgtgataacccttccacttgatcctcctggcaatattgg |
45293285 |
T |
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| Q |
173 |
caccaggtccagtgttggcatactctgcaaaggaaaacgtgctttcataatgtt |
226 |
Q |
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| T |
45293286 |
caccaggtccagtgttggcgtactctgcatagtaacatgtgttttcaaaatgtt |
45293339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 226
Target Start/End: Original strand, 45302146 - 45302299
Alignment:
| Q |
73 |
ggtccagcatcgagccatatactggcggtgtatttggtagcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacattgg |
172 |
Q |
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| T |
45302146 |
ggtccagcttggagccataaaccagcagtgaatttggtagcctcggccctgctaatggcaccgtgataacccttccacttgatcctcctggcaatattgg |
45302245 |
T |
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| Q |
173 |
caccaggtccagtgttggcatactctgcaaaggaaaacgtgctttcataatgtt |
226 |
Q |
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| T |
45302246 |
caccaggtccagtgttggcgtactctgcatagtaacatgtgttttcaaaatgtt |
45302299 |
T |
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