View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9880_high_1 (Length: 492)
Name: NF9880_high_1
Description: NF9880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9880_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 16 - 484
Target Start/End: Complemental strand, 5367483 - 5367015
Alignment:
| Q |
16 |
acttatcacaaacaaaccattattattatattattactatcacataatgatgagtgtttttgtgtatagaaaagaaaaagagttgttactagtaggagtt |
115 |
Q |
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| T |
5367483 |
acttatcacaaacaaaccattattattatattattactatcacataatgatgagtgtttttgtgtatagaaaagaaaaagagttgttactagtaggagtt |
5367384 |
T |
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| Q |
116 |
ttggcagtgtttggagagggattaggaggcaaaaaatattgagtgatgatggatcttagtgggtttgatcaaatattattcacgccggcagctttactct |
215 |
Q |
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| T |
5367383 |
ttggcagtgtttggagagggattaggaggcaaaaaatattgagtgatgatggatcttagtgggtttgatcaaatattattcacgccggcagctttactct |
5367284 |
T |
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| Q |
216 |
ttcttctatctcactatacccgtttggcacgcctgctcccactcatcaaatatgcatattnnnnnnnnnnnnnnnnnnnnnaaaagaatgaaaagtatct |
315 |
Q |
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| T |
5367283 |
ttcttctatctcactatacctatttggcacgcctgctcccactcatcaaatatgcatatt--tctctttctatctctctctaaaagaatgaaaagtatct |
5367186 |
T |
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| Q |
316 |
cttctcactacctttagctcgcactttgataattttcatcttttgtcagacacaattccttttttagcatcagctaggccatatctcctaccaagccatt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5367185 |
cttctcactacctttagctcgcactttgataattttcatcttttgtcagacacaattccttttttagcatcagctaggccatatctcctaccaagccatt |
5367086 |
T |
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| Q |
416 |
tgcttattgaccaataaactcttcttagtcaattaatactata--ctctctccatatccatacacacctat |
484 |
Q |
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| T |
5367085 |
tgcttattgaccaataaacacttcttagtcaattaatactatactctctctccatatccatacacacctat |
5367015 |
T |
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