View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9880_high_10 (Length: 242)
Name: NF9880_high_10
Description: NF9880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9880_high_10 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 14127514 - 14127735
Alignment:
| Q |
21 |
ccttcgtcttgaaacaggtaattcagcaaccttctgctcctgtggagaatattgtcacacaagggttgaacaccgaggtggtaacacattcatatgtttc |
120 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14127514 |
ccttcgtcttgaaacaggtaattcagaaaccttctgctcctgtggagaatattgtcacagaagagttgaacaccgaggtggtaacacattcatatgtttc |
14127613 |
T |
|
| Q |
121 |
cgattcaactatgtcaacgcaacatgtacaaaatatatatgacactcagattcagcatccttcctttagctcgctaatattgctatgcctatctatctga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14127614 |
cgattcaactatgtcaacgcaacatgtacaaaatatatatgacactcagattcagcatccttcctttagctcgctaatattgctatgcctatctatctga |
14127713 |
T |
|
| Q |
221 |
acatccatcaatggaggctgat |
242 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14127714 |
acatccatcaatggaggctgat |
14127735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University