View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9880_high_2 (Length: 486)

Name: NF9880_high_2
Description: NF9880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9880_high_2
NF9880_high_2
[»] chr5 (2 HSPs)
chr5 (17-112)||(4175370-4175465)
chr5 (130-222)||(4175751-4175843)
[»] chr8 (1 HSPs)
chr8 (223-267)||(40948354-40948398)


Alignment Details
Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 4175370 - 4175465
Alignment:
Q  17 caactcttggctgcacaatagcccatacatttcataaatatttattgtaacaatgacaaaaaccaataatgataaatatctaaaataagatactac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4175370 caactcttggctgcacaatagcccatacatttcataaatatttgttgtaacaatgacaaaaaccaataatgataaatatctaaaataagatactac 4175465  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 4175751 - 4175843
Alignment:
Q  130 ttctatgaaattcataagcaatgtatgttgttagggactattctattgttagaaagagagtgccgataacattcttcttggtctcaattccta 222  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||    
T  4175751 ttctttgaaattcataagcaatgtatgttgttagggactattctattgttagaaagagagtgtcgataacactcttcttagtctcaattccta 4175843  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 40948354 - 40948398
Alignment:
Q  223 gggaatggattgtctcctgtataaatgcctccagttttctcctgt 267  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||    
T  40948354 gggaatggattttctccggtgtaaatgcctccagttttctcctgt 40948398  T

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