View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9880_high_6 (Length: 340)
Name: NF9880_high_6
Description: NF9880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9880_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 16977438 - 16977758
Alignment:
| Q |
1 |
ggttttgccaacatttacatcatcataatttacaacatcaagatcatcatgaagattcacactttcttttgctttactaacatttacatcatcatcagag |
100 |
Q |
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| T |
16977438 |
ggttttgccaacatttacatcgtcataatttacaacatcaagatcatcatgaagattcacactttcttttgctttactaacatttacatcatcatcagag |
16977537 |
T |
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| Q |
101 |
acattttgcactgccttttgtatatctgatatttccttctggtttgaagaagaagaagaaccctttattcgatctgaatgctccacttcatcagtgtgta |
200 |
Q |
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| T |
16977538 |
acattttgcactgccctttgtatatctgatatttccttctggtttgaagaagaagaagaaccctttattcgatctgaatgctccacttcatcagtgtgta |
16977637 |
T |
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| Q |
201 |
caaaagaatccttcttcttctcaaaggcattagaaattgctacactaccataatctgaatgctcaacttcatcattgtttacagaaggatttttatcgct |
300 |
Q |
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| T |
16977638 |
caaaagaatccttcttcttctcaaaggcattagaaattgctacactaccataatctgaatgctcaacttcatcattgtttacagaaggatttttatcgct |
16977737 |
T |
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| Q |
301 |
catctcctcaccataatctga |
321 |
Q |
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| T |
16977738 |
catctcctcaccataatctga |
16977758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 214 - 310
Target Start/End: Complemental strand, 10601969 - 10601873
Alignment:
| Q |
214 |
cttcttctcaaaggcattagaaattgctacactaccataatctgaatgctcaacttcatcattgtttacagaaggatttttatcgctcatctcctca |
310 |
Q |
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| T |
10601969 |
cttcttctcaaaggtagtagaagttgctacactaccataatctgaatgctccacttcatcattctttatagaaggacttttatccttcacctcctca |
10601873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 16977747 - 16977810
Alignment:
| Q |
247 |
accataatctgaatgctcaacttcatcattgtttacagaaggatttttatcgctcatctcctca |
310 |
Q |
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| T |
16977747 |
accataatctgaatgctccatttcaccattgtttacagaaggacttttatccttcatctcctca |
16977810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 16977396 - 16977463
Alignment:
| Q |
28 |
atttacaacatcaagatcatcatgaagattcacactttcttttgctttactaacatttacatcatcat |
95 |
Q |
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|||||||||||||| ||||||| ||| ||||||||||||||| | ||| | |||||||||||| |||| |
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| T |
16977396 |
atttacaacatcaaaatcatcacgaacattcacactttctttggttttgccaacatttacatcgtcat |
16977463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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