View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9880_high_7 (Length: 313)
Name: NF9880_high_7
Description: NF9880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9880_high_7 |
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| [»] scaffold0267 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 46165713 - 46165428
Alignment:
| Q |
18 |
acctctgtccctgagtatatgatcttgttgactaaatcataaatattaagagcaagggaaaatttcaagaggttctatagttagggacggaggtagtatt |
117 |
Q |
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| T |
46165713 |
acctctgtccctaagtatatgatcttgttgactaaatcacaaaaattaagagcaagggaaaatttcaagaggttctatagttagggacggaggtagtatt |
46165614 |
T |
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| Q |
118 |
acgaagatcataagaattttttgtatttcaaaccaagcaaaattttacctgcagctcaataatattgtttgaggttgcagcttcggacactatccctgca |
217 |
Q |
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| T |
46165613 |
acgaagatcataagaattttttgtatttcaaaccaagcaaaattttacctgcagctcaataatattgtttgaggttgcagcttcagacactatccctgca |
46165514 |
T |
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| Q |
218 |
agttttaccgcattagatttgaacactgagctgctgaagtctctcaataacttagttgagaattgatagcttgctgattttctctg |
303 |
Q |
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| T |
46165513 |
agttttaccgcattagatttgaacactgagctgctgaagtctctcaataacttagttgagaattgatagcttgctgattttctctg |
46165428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 93 - 220
Target Start/End: Complemental strand, 46158626 - 46158499
Alignment:
| Q |
93 |
tatagttagggacggaggtagtattacgaagatcataagaattttttgtatttcaaaccaagcaaaattttacctgcagctcaataatattgtttgaggt |
192 |
Q |
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| T |
46158626 |
tatagttagggacggaagtagtattacgaagatcataagaattttctgtaattcaaactaaacaacattttacctgcagctcaataatattgtttgaggt |
46158527 |
T |
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| Q |
193 |
tgcagcttcggacactatccctgcaagt |
220 |
Q |
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| T |
46158526 |
tgctgcttcaaacactatccttgcaagt |
46158499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 212 - 295
Target Start/End: Original strand, 46237715 - 46237798
Alignment:
| Q |
212 |
cctgcaagttttaccgcattagatttgaacactgagctgctgaagtctctcaataacttagttgagaattgatagcttgctgat |
295 |
Q |
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| T |
46237715 |
cctgcaagttttaccgcattagatttaaacagtgagctgctgaagtctctcaataacttagttgagaattgatagcttgctgat |
46237798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 180 - 300
Target Start/End: Original strand, 14650 - 14769
Alignment:
| Q |
180 |
tattgtttgaggttgcagcttcggacactatccctgcaagttttaccgcattagatttgaacactgagctgctgaagtctctcaataacttagttgagaa |
279 |
Q |
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| T |
14650 |
tattgtttgagattgcagcttcagacattatcc-tacaagttttactgcactggatttgaacacggatctgcctaattctctcaataacttagttgagaa |
14748 |
T |
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| Q |
280 |
ttgatagcttgctgattttct |
300 |
Q |
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| T |
14749 |
tcgatagcttgctaattttct |
14769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 180 - 300
Target Start/End: Original strand, 3839168 - 3839287
Alignment:
| Q |
180 |
tattgtttgaggttgcagcttcggacactatccctgcaagttttaccgcattagatttgaacactgagctgctgaagtctctcaataacttagttgagaa |
279 |
Q |
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| T |
3839168 |
tattgtttgagattgcagcttcagacattatcc-tacaagttttactgcactggatttgaacacggatctgcctaattctctcaataacttagttgagaa |
3839266 |
T |
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| Q |
280 |
ttgatagcttgctgattttct |
300 |
Q |
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| T |
3839267 |
tcgatagcttgctaattttct |
3839287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 26777250 - 26777209
Alignment:
| Q |
261 |
tcaataacttagttgagaattgatagcttgctgattttctct |
302 |
Q |
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| T |
26777250 |
tcaataactttgttgagaattgatagcttgcagatttgctct |
26777209 |
T |
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