View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9880_low_10 (Length: 254)
Name: NF9880_low_10
Description: NF9880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9880_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 36791024 - 36790796
Alignment:
| Q |
8 |
taacaagtggtttcttttcattctcgtagcgggagtgagtgcaccgcaagatcgacaagtgactccctcacagaggtggcagctgtcttttaagttcaat |
107 |
Q |
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| T |
36791024 |
taacaagtggtttcttttcattctcgcagcgggagtgagtgcaccgcaagatcgacaagtgactccctcacagaggtggcatctgtcttttaagttcaat |
36790925 |
T |
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| Q |
108 |
catttcctaagacagctcctcttattatacgataatccaagtagatccaggagctgaaacatgagtgtttgtctatttttcaagaggaatgcatcaacaa |
207 |
Q |
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| T |
36790924 |
catttcctaagacggctcctcttattatacgataatctaagcagatccaggagctgaaacatgagtgtttgtctatttttcaagaggaatgcatcaacaa |
36790825 |
T |
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| Q |
208 |
aacaacccttccatatagatcgtcgtggc |
236 |
Q |
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| T |
36790824 |
aacaacccttccatatagatcgtcgtggc |
36790796 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 5033471 - 5033402
Alignment:
| Q |
78 |
cagaggtggcagctgtcttttaagttcaatcatttcctaagacagctcctcttattatacgataatccaag |
148 |
Q |
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| T |
5033471 |
cagaggtgacatctgtcttttaaattcagtcattttctaagacgtcttc-cttattatacgataatccaag |
5033402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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