View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9880_low_14 (Length: 235)
Name: NF9880_low_14
Description: NF9880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9880_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 35766352 - 35766144
Alignment:
| Q |
10 |
gaagcataggccagtgacaacatggaagaaaaacgcgacgtgactctaattatcgataattctctcctagagaagaagtcctttgccgatcttggaatca |
109 |
Q |
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| T |
35766352 |
gaagcagaggccagtgacaacatggaagaaaaacgcgacgtgactctaattatcgataattctctcctagtgaagaagtcctttgccgatcttggaatcg |
35766253 |
T |
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| Q |
110 |
tacctactggatggggggatgaagaagaaaaagaacaagtaacaaagcctcctgagccaaattatgcttctcatggatgggaattgaaccaacttgaaaa |
209 |
Q |
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||||||||||||||||||| ||||| |||||||| | |||| ||| ||| |||| ||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
35766252 |
tacctactggatggggggacgaagaggaaaaagatgaggtaagaaaaccttctgaaccaaattatgcttctcaaggatgggaattgaaccaacatgaaaa |
35766153 |
T |
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| Q |
210 |
tgatgaaac |
218 |
Q |
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||||||||| |
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| T |
35766152 |
tgatgaaac |
35766144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 218
Target Start/End: Complemental strand, 35760768 - 35760664
Alignment:
| Q |
111 |
acctactggatggggggatgaagaagaaaaagaacaagtaacaaagcctcctgagccaaattatgcttctcatggatgggaattgaaccaacttgaaaat |
210 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||| |||| || ||||||||| |||| |||||||||| |||||||| ||||||| |
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| T |
35760768 |
acctactggatggggggacgaagaagaaaaagaa---gtaacaaagccttctgaaccgaattatgctgctcagggatgggaatcgaaccaacatgaaaat |
35760672 |
T |
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| Q |
211 |
gatgaaac |
218 |
Q |
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||||||| |
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| T |
35760671 |
aatgaaac |
35760664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 35755618 - 35755518
Alignment:
| Q |
118 |
ggatggggggatgaagaagaaaaagaacaagtaacaaagcctcctgagccaaattatgcttctcatggatgggaattgaaccaacttgaaaatgatgaaa |
217 |
Q |
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||||||||||| ||||||||||||||| |||| | ||||||| ||||||||||||||||| ||| |||||||||| || |||| ||||||| |||||| |
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| T |
35755618 |
ggatggggggacgaagaagaaaaagaagaagttagaaagccttctgagccaaattatgctggtcagggatgggaatcaaatcaacatgaaaataatgaaa |
35755519 |
T |
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| Q |
218 |
c |
218 |
Q |
| |
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| |
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| T |
35755518 |
c |
35755518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 218
Target Start/End: Complemental strand, 35799201 - 35799097
Alignment:
| Q |
111 |
acctactggatggggggatgaagaagaaaaagaacaagtaacaaagcctcctgagccaaattatgcttctcatggatgggaattgaaccaacttgaaaat |
210 |
Q |
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|||||||||||||||||| |||||||| ||| | ||||||||||| |||| |||||||||||| ||| ||||| |||| ||||||| ||||||| |
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| T |
35799201 |
acctactggatggggggacgaagaagac---gaaaagttaacaaagccttctgaaccaaattatgctgctctgggatgcgaatcaaaccaacatgaaaat |
35799105 |
T |
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| Q |
211 |
gatgaaac |
218 |
Q |
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||||||| |
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| T |
35799104 |
aatgaaac |
35799097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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