View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9880_low_15 (Length: 225)

Name: NF9880_low_15
Description: NF9880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9880_low_15
NF9880_low_15
[»] chr1 (13 HSPs)
chr1 (1-225)||(38731862-38732088)
chr1 (61-225)||(28040729-28040893)
chr1 (71-225)||(37200606-37200760)
chr1 (60-216)||(35386927-35387083)
chr1 (169-225)||(19035876-19035932)
chr1 (60-214)||(7794528-7794683)
chr1 (15-223)||(34644862-34645069)
chr1 (61-148)||(19035788-19035876)
chr1 (177-225)||(22375176-22375224)
chr1 (60-216)||(7434766-7434921)
chr1 (61-116)||(29169505-29169560)
chr1 (61-159)||(22347218-22347316)
chr1 (60-124)||(52912888-52912952)
[»] chr2 (13 HSPs)
chr2 (1-225)||(17344920-17345143)
chr2 (61-225)||(20142342-20142506)
chr2 (61-225)||(41867510-41867674)
chr2 (61-225)||(4412668-4412832)
chr2 (61-225)||(9685017-9685181)
chr2 (1-225)||(44686700-44686922)
chr2 (61-215)||(33612153-33612307)
chr2 (1-144)||(5532708-5532850)
chr2 (85-225)||(19161428-19161567)
chr2 (61-225)||(28225341-28225505)
chr2 (59-115)||(13146854-13146910)
chr2 (63-116)||(18744665-18744718)
chr2 (195-225)||(18744620-18744650)
[»] chr5 (11 HSPs)
chr5 (1-225)||(3113768-3113990)
chr5 (64-225)||(15291625-15291786)
chr5 (61-223)||(26212187-26212349)
chr5 (61-224)||(433633-433796)
chr5 (64-224)||(27337037-27337197)
chr5 (1-195)||(13166542-13166735)
chr5 (137-218)||(25662926-25663007)
chr5 (13-116)||(38446460-38446562)
chr5 (60-116)||(35310788-35310844)
chr5 (147-216)||(32269404-32269473)
chr5 (180-225)||(35456222-35456267)
[»] chr8 (9 HSPs)
chr8 (61-225)||(24125369-24125533)
chr8 (1-224)||(39434949-39435171)
chr8 (61-225)||(37517430-37517594)
chr8 (72-213)||(25021418-25021559)
chr8 (59-152)||(10189882-10189975)
chr8 (61-225)||(500568-500732)
chr8 (61-225)||(42921732-42921893)
chr8 (164-218)||(4007052-4007106)
chr8 (1-35)||(35739778-35739812)
[»] chr3 (9 HSPs)
chr3 (61-225)||(53786050-53786213)
chr3 (13-223)||(29862091-29862300)
chr3 (60-225)||(52411504-52411669)
chr3 (103-225)||(7501741-7501862)
chr3 (13-225)||(35236422-35236633)
chr3 (61-116)||(52741222-52741277)
chr3 (182-225)||(49018414-49018457)
chr3 (169-225)||(52741129-52741185)
chr3 (61-116)||(49018304-49018359)
[»] chr6 (11 HSPs)
chr6 (61-225)||(45271-45435)
chr6 (61-225)||(4206198-4206362)
chr6 (61-225)||(32116030-32116194)
chr6 (62-223)||(29337690-29337851)
chr6 (14-225)||(34304791-34305002)
chr6 (59-116)||(20693311-20693368)
chr6 (60-139)||(28008727-28008806)
chr6 (1-152)||(357392-357542)
chr6 (60-111)||(14538655-14538706)
chr6 (101-204)||(32120310-32120413)
chr6 (76-121)||(23910992-23911037)
[»] chr4 (13 HSPs)
chr4 (61-217)||(16957877-16958032)
chr4 (61-225)||(53170840-53171003)
chr4 (61-225)||(56461716-56461879)
chr4 (1-159)||(3330232-3330389)
chr4 (155-225)||(48505800-48505870)
chr4 (13-160)||(34952465-34952611)
chr4 (61-116)||(25504635-25504690)
chr4 (61-140)||(50000612-50000691)
chr4 (63-153)||(25706851-25706940)
chr4 (61-116)||(48506751-48506806)
chr4 (61-116)||(132726-132781)
chr4 (101-197)||(12917996-12918092)
chr4 (59-119)||(28882861-28882921)
[»] chr7 (11 HSPs)
chr7 (61-225)||(4501599-4501763)
chr7 (61-225)||(24527931-24528095)
chr7 (13-224)||(10905397-10905607)
chr7 (65-223)||(32585492-32585650)
chr7 (61-204)||(45613465-45613608)
chr7 (61-139)||(28516975-28517053)
chr7 (14-225)||(47679420-47679629)
chr7 (128-225)||(5827662-5827759)
chr7 (102-205)||(43857247-43857349)
chr7 (85-225)||(4175577-4175724)
chr7 (61-153)||(19277634-19277725)
[»] scaffold0186 (1 HSPs)
scaffold0186 (60-225)||(20061-20226)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 38731862 - 38732088
Alignment:
Q  1 agttcacagggacctccttcttcactgatactcccacctgcctaaatatatnnnnnnn--tgacatccctaacaaagtcatgtttgtacttaaagccaag 98  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||| ||||||||||||||||||    
T  38731862 agttcatagggacctccttcttcactgatactcccacctgcctaaatatataaaaaaaaatgacatccctaacaaagtcatatttgtacttaaagccaag 38731961  T
Q  99 aagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataagg 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38731962 aagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataagg 38732061  T
Q  199 cgatatctaaggatagtacgatactcc 225  Q
    |||||||||||||||||||| ||||||    
T  38732062 cgatatctaaggatagtacggtactcc 38732088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 61 - 225
Target Start/End: Complemental strand, 28040893 - 28040729
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    ||||||||||||||||||||| |||||||||| ||  ||| ||| |||||||||||   ||||| |  |||||||| ||| ||||| |||||  |||||     
T  28040893 acatccctaacaaagtcatgtatgtacttaaatccgggaaactcattacaatgaacgacatgctccctaaaagtattcagtcacacattacggcaaacag 28040794  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
      || ||  |||||  |||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  28040793 ggcacaccacatcattaggaaataatggaatcataaggcgatatctaaggatagtatgatactcc 28040729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 71 - 225
Target Start/End: Original strand, 37200606 - 37200760
Alignment:
Q  71 caaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatc 170  Q
    ||||||||||| || |||||||| ||  ||||||||||||||||| || ||| | | |||||||||||| ||||  ||||| | ||  |   || || ||    
T  37200606 caaagtcatgtatgaacttaaaggcagaaagctccttacaatgaaatgaatgatccccaaaagtatccaagcacgtcttacaacaagtagggcacacctc 37200705  T
Q  171 atcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  37200706 atcaataggaaatagtggaattataaggcgatatctaaggatagtatgatactcc 37200760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 60 - 216
Target Start/End: Complemental strand, 35387083 - 35386927
Alignment:
Q  60 gacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaaca 159  Q
    |||||||||| | ||||||| | |||||||||||  | |||||||||||||| |||||| ||||| |  | || |||||| ||||||||||||| |||||    
T  35387083 gacatccctagctaagtcatctatgtacttaaagttaggaagctccttacaacgaactgcatgctcctaacaaatatccaagcacaccttacgacaaaca 35386984  T
Q  160 aaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagta 216  Q
      |||| | ||||||| |  |||||||| ||| ||||| ||||||||||| ||||||    
T  35386983 ggacatgcctcatcaataaaaaatagtgaaattataagtcgatatctaagaatagta 35386927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 19035876 - 19035932
Alignment:
Q  169 tcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  19035876 tcatcaaaaggatatagtggaatcataaggcgatatctaaggatagtatgatactcc 19035932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 60 - 214
Target Start/End: Complemental strand, 7794683 - 7794528
Alignment:
Q  60 gacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcac-aaaagtatccaggcacaccttacgaaaaac 158  Q
    |||||||||| ||||  ||||||||||||||||| | | |||||  ||||||||||||  ||||| | | |||||||||||| ||| |||||||| ||||    
T  7794683 gacatccctagcaaaaccatgtttgtacttaaagtcgaaaagctttttacaatgaactacatgctccccaaaaagtatccagacacgccttacgacaaac 7794584  T
Q  159 aaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatag 214  Q
    ||     || | ||||| | |||||| |||||||||||||||||||| ||||||||    
T  7794583 aaggtgcaccttatcaatatgaaataatggaatcataaggcgatatcaaaggatag 7794528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 34644862 - 34645069
Alignment:
Q  15 tccttcttcactgatactcccacctgcctaaatatatnnnnnnntgacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatga 114  Q
    ||||||||||||||||||||| ||  ||| |||||||       | |||||||||| |||||||||  ||||||||||| |  ||||||| |||||||||    
T  34644862 tccttcttcactgatactcccgccctcctgaatatatcaaaaagt-acatccctaataaagtcatgcctgtacttaaagtcgggaagctctttacaatga 34644960  T
Q  115 actgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatag 214  Q
    ||   |||||   ||||||||||||| ||| ||||| || |||||   ||  | ||||||  || |||||||||||||||||| ||||||| |||||||     
T  34644961 acgacatgctcgccaaaagtatccagacacgccttatgacaaacagggcactcctcatcactagaaaatagtggaatcataagacgatatcgaaggataa 34645060  T
Q  215 tacgatact 223  Q
    |||| ||||    
T  34645061 tacggtact 34645069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 19035788 - 19035876
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgct-tcacaaaagtatccaggcacacct 148  Q
    |||||||||||||| |||||| ||||||||||| |  |||||||||||||||||||   |||||  | |||||||||||||||||||||    
T  19035788 acatccctaacaaattcatgtctgtacttaaagtcgggaagctccttacaatgaacgacatgctcccccaaaagtatccaggcacacct 19035876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 22375176 - 22375224
Alignment:
Q  177 aggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  22375176 aggaaatagtagaatcataaggcgatatctaaggatagtacgttactcc 22375224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 216
Target Start/End: Original strand, 7434766 - 7434921
Alignment:
Q  60 gacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaaca 159  Q
    |||||||||||||||||||||| |||| || ||| |   ||| |||||||||||||||  ||||| | |||| | ||| || ||| |||||||   ||||    
T  7434766 gacatccctaacaaagtcatgtctgtatttgaagtcggaaagttccttacaatgaacttcatgctccccaaatgcatctagacacgccttacg-gtaaca 7434864  T
Q  160 aaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagta 216  Q
    |||||  | ||||||| |||||||| | ||||||| ||||||||| | |||||||||    
T  7434865 aaacaagcctcatcaataggaaataatagaatcatgaggcgatatatgaggatagta 7434921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 29169560 - 29169505
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaac 116  Q
    |||||||| |||||||| ||| ||||||||||||| ||||| ||||||||||||||    
T  29169560 acatcccttacaaagtcgtgtctgtacttaaagccgagaagttccttacaatgaac 29169505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 159
Target Start/End: Original strand, 22347218 - 22347316
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaaca 159  Q
    |||||||||||||||| |||| | |||||||||||   ||||||||||||||||||   ||||| | |  |||||||||||||  |||||||| |||||    
T  22347218 acatccctaacaaagttatgtctatacttaaagccggtaagctccttacaatgaacgacatgctccccttaagtatccaggcatgccttacgacaaaca 22347316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 52912888 - 52912952
Alignment:
Q  60 gacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgct 124  Q
    ||||||||||||||||||| |  | |||||||||||  ||||||||||| |||||| ||| ||||    
T  52912888 gacatccctaacaaagtcacgcctatacttaaagccttgaagctccttagaatgaaatgtgtgct 52912952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 17344920 - 17345143
Alignment:
Q  1 agttcacagggacctccttcttcactgatactcccacctgcctaaatatatnnnnnnntgacatccctaacaaagtcatgtttgtacttaaagccaagaa 100  Q
    ||||||||||  ||||||||||||||||||||||  || | || |||||||       | ||||||||||||||||| ||| |||||||||||||| |||    
T  17344920 agttcacaggcgcctccttcttcactgatactcctgcccgtctgaatatatcaaaaagt-acatccctaacaaagtcgtgtctgtacttaaagccaggaa 17345018  T
Q  101 gctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcg 200  Q
    | ||||||||||||||   ||||| | ||||||||||||||||| |||||||| |||||   || || ||||||| ||||||||||||| ||||||||||    
T  17345019 gttccttacaatgaacgacatgctccccaaaagtatccaggcacgccttacgacaaacagggcacacctcatcaataggaaatagtggattcataaggcg 17345118  T
Q  201 atatctaaggatagtacgatactcc 225  Q
    |||||||||||||||||||||||||    
T  17345119 atatctaaggatagtacgatactcc 17345143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 61 - 225
Target Start/End: Complemental strand, 20142506 - 20142342
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||   ||||| | ||||||||||||| ||| |||||||| |||||     
T  20142506 acatccctaacaaagtcatgtctgtacttaaagcctggaagctccttacaatgaacgacatgctccccaaaagtatccagacacgccttacgacaaacag 20142407  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
      || || ||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20142406 ggcacacctcatcattaggaaatagtggaatcataaggcgatatctaaggatagtacaatactcc 20142342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 61 - 225
Target Start/End: Complemental strand, 41867674 - 41867510
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    |||||||||||||||||| || |||||||||||||  ||||||||||||||||||  | ||||| | ||||||||||||| |||  ||||||| |||||     
T  41867674 acatccctaacaaagtcacgtctgtacttaaagccgggaagctccttacaatgaatggcatgctccccaaaagtatccagacacgacttacgacaaacag 41867575  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
    | || || ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41867574 agcacacctcatcaataggaaatagtggaatcataagacgatatctaaggatagtacgatactcc 41867510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 61 - 225
Target Start/End: Complemental strand, 4412832 - 4412668
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    ||||||||||||||||||||| || ||||||||||   ||||||||||||||||||   ||||| | ||||||||||||| ||| ||||||||  |||||    
T  4412832 acatccctaacaaagtcatgtctgcacttaaagccggaaagctccttacaatgaacgacatgctccccaaaagtatccagacacgccttacgaccaacaa 4412733  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
      || || ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4412732 ggcacacctcatcaataggaaatagtggaatcataagacgatatctaaggatagtacgatactcc 4412668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 61 - 225
Target Start/End: Complemental strand, 9685181 - 9685017
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||     ||| | ||||||||||||| ||| |||||||| |||||     
T  9685181 acatccctaacaaagtcatgtctgtacttaaagccgggaagctccttacaatgaacgacgcgctccccaaaagtatccagacacgccttacgacaaacag 9685082  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
      ||  | ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9685081 ggcacgcctcatcaataggaaatagtggaatcgtaaggcgatatctaaggatagtacgatactcc 9685017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 44686700 - 44686922
Alignment:
Q  1 agttcacagggacctccttcttcactgatactcccacctgcctaaatatatnnnnnnntgacatccctaacaaagtcatgtttgtacttaaagccaagaa 100  Q
    ||||||||||  ||||||||||||||||||||||| || | || |||||||       | ||||  |||||||| | |||  |||||||||||||  |||    
T  44686700 agttcacaggcccctccttcttcactgatactcccgcccgtctgaatatatcaaaaagt-acatatctaacaaaatgatgcatgtacttaaagccgggaa 44686798  T
Q  101 gctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcg 200  Q
    |||||||||||||||    ||||| | ||||||||||||| |||| ||||||| |||||  ||| || ||||||| |||| |||||||||||||||| ||    
T  44686799 gctccttacaatgaatgacatgctcc-caaaagtatccagacacatcttacgacaaacaggacacacctcatcaataggacatagtggaatcataagacg 44686897  T
Q  201 atatctaaggatagtacgatactcc 225  Q
    ||||| |||||||||||||||||||    
T  44686898 atatcgaaggatagtacgatactcc 44686922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 61 - 215
Target Start/End: Complemental strand, 33612307 - 33612153
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    |||||||| |||||||||||| ||||||||||  |  |||||||||||||||||  |||||||| | ||||||||||||| ||||| |||||| |||||     
T  33612307 acatccctgacaaagtcatgtatgtacttaaaatctggaagctccttacaatgagttgtatgctccccaaaagtatccagacacactttacgacaaacat 33612208  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagt 215  Q
     ||| || ||||||| | ||||||||| |||||||||| |||||||| |||||||    
T  33612207 gacacacctcatcaatatgaaatagtgaaatcataaggtgatatctagggatagt 33612153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 5532708 - 5532850
Alignment:
Q  1 agttcacagggacctccttcttcactgatactcccacctgcctaaatatatnnnnnnntgacatccctaacaaagtcatgtttgtacttaaagccaagaa 100  Q
    ||||||||||| ||||||||||||||||||||||| |  | || |||||||       ||||||| |||||||| | ||||||||||||||||||| |||    
T  5532708 agttcacaggggcctccttcttcactgatactcccgctcgtctgaatatattaaaaa-tgacatctctaacaaatttatgtttgtacttaaagccatgaa 5532806  T
Q  101 gctccttacaatgaactgtatgcttcacaaaagtatccaggcac 144  Q
    |||||||||||||||||| ||||| | ||||||||| |||||||    
T  5532807 gctccttacaatgaactgcatgctccccaaaagtattcaggcac 5532850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 85 - 225
Target Start/End: Complemental strand, 19161567 - 19161428
Alignment:
Q  85 tacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaata 184  Q
    |||||| ||||  |||||||||||||||||||   ||||| | ||||||||||||||| | |||||||| ||||| | || || ||||  | ||||||||    
T  19161567 tacttatagccgggaagctccttacaatgaacgacatgctccccaaaagtatccaggcgcgccttacgacaaacagagca-acctcattgataggaaata 19161469  T
Q  185 gtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
    ||| ||||||||| |||||||||| ||||||||||||||||    
T  19161468 gtgcaatcataagacgatatctaatgatagtacgatactcc 19161428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 61 - 225
Target Start/End: Original strand, 28225341 - 28225505
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    ||||||||||||||||||||  |||||||||||||   || ||||||||||||||| | ||||| | |||||||||| || |||  ||||||| |||||     
T  28225341 acatccctaacaaagtcatgcctgtacttaaagccggaaaactccttacaatgaacggcatgctccccaaaagtatctagacacgtcttacgacaaacat 28225440  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
      || || |||||||  | ||||| ||||||||||||  |||||| | |||||||||| ||||||    
T  28225441 ggcacacctcatcaatggaaaataatggaatcataagatgatatcgacggatagtacggtactcc 28225505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 13146910 - 13146854
Alignment:
Q  59 tgacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaa 115  Q
    |||||||| |||||||||||||||||||||| ||| ||  |||||||||||||||||    
T  13146910 tgacatccttaacaaagtcatgtttgtactttaagtcagaaagctccttacaatgaa 13146854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 18744718 - 18744665
Alignment:
Q  63 atccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaac 116  Q
    ||||||||||||||| ||| ||||||||||| || |||| ||||||||||||||    
T  18744718 atccctaacaaagtcgtgtatgtacttaaaggcaggaagttccttacaatgaac 18744665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 225
Target Start/End: Complemental strand, 18744650 - 18744620
Alignment:
Q  195 aaggcgatatctaaggatagtacgatactcc 225  Q
    |||||||||||||||||||||||||||||||    
T  18744650 aaggcgatatctaaggatagtacgatactcc 18744620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3113990 - 3113768
Alignment:
Q  1 agttcacagggacctccttcttcactgatactcccacctgcctaaatatatnnnnnnntgacatccctaacaaagtcatgtttgtacttaaagccaagaa 100  Q
    ||||||||||| ||||||||||||||||||||||| ||   || |||||||        |||||||||||||||||||||||||||||||||||||  ||    
T  3113990 agttcacaggggcctccttcttcactgatactcccgcccagctgaatatatcaaaaag-gacatccctaacaaagtcatgtttgtacttaaagccagaaa 3113892  T
Q  101 gctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcg 200  Q
    |||||||||||||||||| |||| || |||||||||||||| || ||||  || ||| |   || || ||||||| |||| ||||||||||||||||||     
T  3113891 gctccttacaatgaactgcatgc-tcccaaaagtatccaggtacgccttgtgacaaatagggcacacctcatcaataggagatagtggaatcataaggca 3113793  T
Q  201 atatctaaggatagtacgatactcc 225  Q
    |||||||||||||||||||||||||    
T  3113792 atatctaaggatagtacgatactcc 3113768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 15291786 - 15291625
Alignment:
Q  64 tccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaac 163  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||   ||||| | ||||||||||||| ||| |||||||| |||||  ||    
T  15291786 tccctaacaaagtcatgtttgtacttaaagccgggaagctccttacaatgaacaacatgctccccaaaagtatccagacacgccttacgataaacatgac 15291687  T
Q  164 atacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
    | || ||||||| || |||||||||||||||| | |||||||||||||||||||||||||||    
T  15291686 acacctcatcaatagaaaatagtggaatcatacgacgatatctaaggatagtacgatactcc 15291625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 26212349 - 26212187
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    |||||||||||||| |||||| ||||||||||||| |||||||||||||||| |||   ||||| | ||||||||||||||||| |||||||| |||||     
T  26212349 acatccctaacaaaatcatgtatgtacttaaagccgagaagctccttacaataaacgacatgctccccaaaagtatccaggcacgccttacgacaaacag 26212250  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatact 223  Q
     ||| || ||||||| |||||||| || |||||||| |||||||||||||  |||||||||||    
T  26212249 gacacacttcatcaataggaaataatgaaatcataaagcgatatctaaggtcagtacgatact 26212187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 224
Target Start/End: Original strand, 433633 - 433796
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    ||||||||||||||||||||  |||||||||||    |||||||||||||||||||   ||||| | ||||||||||||| ||| |||||||| |||||     
T  433633 acatccctaacaaagtcatgcctgtacttaaagttgggaagctccttacaatgaacgacatgctccccaaaagtatccagacacgccttacgacaaacag 433732  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactc 224  Q
      || || ||||||| |||||| |||||||||||||| ||||||| ||||||||| ||||||||    
T  433733 tgcacacctcatcaataggaaaaagtggaatcataagacgatatcgaaggatagtccgatactc 433796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 64 - 224
Target Start/End: Original strand, 27337037 - 27337197
Alignment:
Q  64 tccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaac 163  Q
    ||||||||||||||| || |||||||||||||  |||| |||||||||||||| | ||||| |  |||||||||||| ||  |||||||| |||||   |    
T  27337037 tccctaacaaagtcaagtatgtacttaaagccgggaagttccttacaatgaacggcatgctccctaaaagtatccagacatgccttacgacaaacagggc 27337136  T
Q  164 atacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactc 224  Q
    | || ||||||| |||||| |||||||||||||| ||||||| |||||||||||| |||||    
T  27337137 acacctcatcaataggaaaaagtggaatcataagacgatatcgaaggatagtacggtactc 27337197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 13166735 - 13166542
Alignment:
Q  1 agttcacagggacctccttcttcactgatactcccacctgcctaaatatatnnnnnnntgacatccctaacaaagtcatgtttgtacttaaagccaagaa 100  Q
    ||||||||||  | |||||||||||||||||| || || |||| |||||||       | |||||||| ||||||||||| ||||| ||||||| |  ||    
T  13166735 agttcacaggcgcttccttcttcactgatacttccgcccgcctgaatatatcaaaaagt-acatcccttacaaagtcatgcttgtatttaaagctacaaa 13166637  T
Q  101 gctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcata 195  Q
    ||||||||||||||||   ||||| | | ||||||||||| ||| |||||| | ||||| | || || |||||||   |||||||||||||||||    
T  13166636 gctccttacaatgaacgacatgctccccgaaagtatccagacacgccttacaacaaacagagcacacctcatcaatcagaaatagtggaatcata 13166542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 218
Target Start/End: Complemental strand, 25663007 - 25662926
Alignment:
Q  137 ccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacg 218  Q
    |||| ||| |||||||| ||||||  || || ||||||| ||||||||||||||||||||| ||||||| ||||||||||||    
T  25663007 ccagacacgccttacgacaaacaaggcacacctcatcaataggaaatagtggaatcataagacgatatcgaaggatagtacg 25662926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 38446460 - 38446562
Alignment:
Q  13 cctccttcttcactgatactcccacctgcctaaatatatnnnnnnntgacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaat 112  Q
    ||||||||||||||||||||||| || |||| |||||||       | ||||||||||||||||||||  |||||||||||    |||||||||||||||    
T  38446460 cctccttcttcactgatactcccgcccgcctgaatatatcaaaaagt-acatccctaacaaagtcatgcatgtacttaaagttgggaagctccttacaat 38446558  T
Q  113 gaac 116  Q
    ||||    
T  38446559 gaac 38446562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 35310788 - 35310844
Alignment:
Q  60 gacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaac 116  Q
    |||||||||||||||||||||| ||||||||||||    ||||||||||||||||||    
T  35310788 gacatccctaacaaagtcatgtctgtacttaaagctggaaagctccttacaatgaac 35310844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 32269473 - 32269404
Alignment:
Q  147 cttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagta 216  Q
    ||||||| | |||| |||||| ||||||| || |||||||||||||||||| | ||||| ||||||||||    
T  32269473 cttacgacacacaagacatacctcatcaatagaaaatagtggaatcataagacaatatccaaggatagta 32269404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 35456222 - 35456267
Alignment:
Q  180 aaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
    ||||||||||||||||||| ||||||||||||||||| | ||||||    
T  35456222 aaatagtggaatcataaggtgatatctaaggatagtatggtactcc 35456267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 61 - 225
Target Start/End: Original strand, 24125369 - 24125533
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    ||||||||||||||||||||||||||||||||| |  ||||||||||| ||||||| | ||||| | ||||||||||||| ||| |||||||| |||||     
T  24125369 acatccctaacaaagtcatgtttgtacttaaagtcgggaagctccttaaaatgaacggcatgctccccaaaagtatccagacacgccttacgacaaacag 24125468  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
      || || ||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||||||    
T  24125469 ggcacacctcatcaataggaaatagtggaatcataatgcgatatttaaggatagtacggtactcc 24125533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 39434949 - 39435171
Alignment:
Q  1 agttcacagggacctccttcttcactgatactcccacctgcctaaatatatnnnnnnntgacatccctaacaaagtcatgtttgtacttaaagccaagaa 100  Q
    ||||||||||  ||||||||||||||||||||||| |  |||| |||||||       | ||||||||||||||||||||  |||||||||||||  |||    
T  39434949 agttcacaggcgcctccttcttcactgatactcccgctcgcctgaatatatcaaaaagt-acatccctaacaaagtcatgcctgtacttaaagccgggaa 39435047  T
Q  101 gctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcg 200  Q
    | || ||||||||||| | ||||| | ||||||||||||| ||| |||||||| |||||   || || ||||||| |||||| |||||||||||||| ||    
T  39435048 gttctttacaatgaacggcatgctccccaaaagtatccagacacgccttacgacaaacagggcacacctcatcaataggaaaaagtggaatcataagacg 39435147  T
Q  201 atatctaaggatagtacgatactc 224  Q
    ||||| |||||||||||| |||||    
T  39435148 atatcgaaggatagtacggtactc 39435171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 225
Target Start/End: Original strand, 37517430 - 37517594
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    ||||||||||||||||||||| ||||||||||| |  ||||||||||||||||||| | ||||| | || ||| |||||  |||  ||||||| |||||     
T  37517430 acatccctaacaaagtcatgtctgtacttaaagtcgggaagctccttacaatgaacggcatgctccccagaagaatccacacacgtcttacgataaacag 37517529  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
      || || ||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||    
T  37517530 ggcacacctcatcaataggaaatagtggaatcataaggcgatatctaaggatattatgatactcc 37517594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 72 - 213
Target Start/End: Complemental strand, 25021559 - 25021418
Alignment:
Q  72 aaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatca 171  Q
    |||||||||| | |||||||| ||||||||||||||||||||||||  ||||||| |||||||||| |||||| |||||||| ||| |   || || |||    
T  25021559 aaagtcatgtctatacttaaatccaagaagctccttacaatgaactacatgcttcccaaaagtatcaaggcacgccttacgataaatatggcacacctca 25021460  T
Q  172 tcaacaggaaatagtggaatcataaggcgatatctaaggata 213  Q
    |||| | |||||||||||||||| ||||||||||||||||||    
T  25021459 tcaatatgaaatagtggaatcatgaggcgatatctaaggata 25021418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 10189882 - 10189975
Alignment:
Q  59 tgacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacg 152  Q
    |||||| | ||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||| |  ||||||||||||||||||||||||    
T  10189882 tgacattcttaacaaagtcatgtttgtacttaaagccgtgaagctccttacaatgaactgcatgctccttaaaagtatccaggcacaccttacg 10189975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 61 - 225
Target Start/End: Original strand, 500568 - 500732
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    |||||||||||||| |||||  ||||||||||| |  || ||||||||||||||||   ||||| | |||||||||| |||||  |||||| | |||||     
T  500568 acatccctaacaaaatcatgcatgtacttaaagtcgggatgctccttacaatgaacgacatgctccccaaaagtatctaggcatgccttacaacaaacag 500667  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
      || || ||||||| |||||||| ||||||| |||||| |||||||||||||||||| ||||||    
T  500668 gtcacacctcatcaataggaaatattggaatcgtaaggcaatatctaaggatagtacggtactcc 500732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 225
Target Start/End: Complemental strand, 42921893 - 42921732
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    ||||||||||| ||||||||| |||||||||||||||||| || |||||||||||||  |||||   ||||| ||| ||   ||| ||||||| |||| |    
T  42921893 acatccctaacgaagtcatgtatgtacttaaagccaagaaacttcttacaatgaactacatgctctccaaaaatattca---acatcttacgacaaacga 42921797  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
      |  || ||||||| | |||||| |||||||||||| ||||||| ||  |||||| ||||||||    
T  42921796 ggcgcacctcatcaataagaaataatggaatcataagacgatatcgaataatagtatgatactcc 42921732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 4007106 - 4007052
Alignment:
Q  164 atacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacg 218  Q
    |||| ||||||| || |||||||||||||||||| ||||||||||||||| ||||    
T  4007106 atacctcatcaatagaaaatagtggaatcataagacgatatctaaggataatacg 4007052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 35739812 - 35739778
Alignment:
Q  1 agttcacagggacctccttcttcactgatactccc 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  35739812 agttcacaggcacctccttcttcactgatactccc 35739778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 61 - 225
Target Start/End: Original strand, 53786050 - 53786213
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    ||||||||||||||||| ||| |||||||||||||  |||||||||||||||||||   ||||| | ||||||||||||||||| |||||||| ||||||    
T  53786050 acatccctaacaaagtcgtgtctgtacttaaagccg-gaagctccttacaatgaacgacatgctccccaaaagtatccaggcacgccttacgacaaacaa 53786148  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
       | || ||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||    
T  53786149 ggtacacctcatcaataggaaatagttgaatcataaggcgatatctaaggataatacgatactcc 53786213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 29862091 - 29862300
Alignment:
Q  13 cctccttcttcactgatactcccacctgcctaaatatatnnnnnnntgacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaat 112  Q
    |||| ||||||||| |||||||| ||||||| |||||||       | ||||||||||||||||||||  |||||||||| |  ||||||||||||||||    
T  29862091 cctctttcttcactaatactcccgcctgcctgaatatatcaaaaagt-acatccctaacaaagtcatgcctgtacttaaaactcagaagctccttacaat 29862189  T
Q  113 gaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggat 212  Q
    ||||   ||||| | |||||||||| |||||| |||||||| ||| | |  | || ||||||| |||||||| |||||||||||||||||||||||||||    
T  29862190 gaacgacatgctccccaaaagtatctaggcacgccttacgataaatagagaacacctcatcaataggaaataatggaatcataaggcgatatctaaggat 29862289  T
Q  213 agtacgatact 223  Q
    |||||| ||||    
T  29862290 agtacgctact 29862300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 225
Target Start/End: Complemental strand, 52411669 - 52411504
Alignment:
Q  60 gacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaaca 159  Q
    ||||||||||| ||||||||||   ||||||||||  ||||||||||||||||||||   ||||| | ||||||||| ||||||| |||||||| |||||    
T  52411669 gacatccctaataaagtcatgtcaatacttaaagctgagaagctccttacaatgaacgacatgctccccaaaagtattcaggcacgccttacgacaaaca 52411570  T
Q  160 aaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
      ||| || | ||||| |||||| | |||||||| |||||||||||||||||||| ||||||||||    
T  52411569 ggacacaccttatcaataggaaacaatggaatcacaaggcgatatctaaggatagcacgatactcc 52411504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 103 - 225
Target Start/End: Complemental strand, 7501862 - 7501741
Alignment:
Q  103 tccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgat 202  Q
    |||||||||||||||| ||||| | ||||||||||||| ||| | |||||| ||||||| || || ||||||| | ||||||| ||||| ||||||||||    
T  7501862 tccttacaatgaactgcatgctccccaaaagtatccagacacgcattacgacaaacaaa-cacacctcatcaatatgaaatagaggaattataaggcgat 7501764  T
Q  203 atctaaggatagtacgatactcc 225  Q
    |||||||||||||||| ||||||    
T  7501763 atctaaggatagtacggtactcc 7501741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 35236422 - 35236633
Alignment:
Q  13 cctccttcttcactgatactcccacctgcctaaatatatnnnnnnntgacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaat 112  Q
    |||||||||||||| |||||||| || ||||||||||||       | |||||| |||||||||||||  ||| ||||||| || |||| ||||||||||    
T  35236422 cctccttcttcactcatactcccgcccgcctaaatatataaaaaagt-acatccttaacaaagtcatgcatgtgcttaaagtcaggaagatccttacaat 35236520  T
Q  113 gaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggat 212  Q
     |||   |||||||  |||||||||||| ||||  |||||| | ||  | || || ||||||| |||||||| |   ||||||| |||||||||||||||    
T  35236521 aaacaacatgcttcctaaaagtatccagacacatgttacgacagacggagcacacctcatcaataggaaataataacatcataaagcgatatctaaggat 35236620  T
Q  213 agtacgatactcc 225  Q
    |||| | ||||||    
T  35236621 agtatggtactcc 35236633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 52741277 - 52741222
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaac 116  Q
    ||||||||||||||||||||| ||||||||||| |  |||||||||||||||||||    
T  52741277 acatccctaacaaagtcatgtctgtacttaaagtcgggaagctccttacaatgaac 52741222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 225
Target Start/End: Original strand, 49018414 - 49018457
Alignment:
Q  182 atagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
    ||||||||||||||||||||||||||| |||||| |||||||||    
T  49018414 atagtggaatcataaggcgatatctaatgatagttcgatactcc 49018457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 52741185 - 52741129
Alignment:
Q  169 tcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
    ||||||| | |||||||||||||||||||  | ||||||||||||||| ||||||||    
T  52741185 tcatcaatatgaaatagtggaatcataagatggtatctaaggatagtatgatactcc 52741129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 49018304 - 49018359
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaac 116  Q
    ||||||||||||||||||||| ||||||||||  || |||| | ||||||||||||    
T  49018304 acatccctaacaaagtcatgtatgtacttaaaatcaggaagtttcttacaatgaac 49018359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 61 - 225
Target Start/End: Complemental strand, 45435 - 45271
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    ||||||||||||||||||||| |||||||||| || ||||||||||||||  ||||   ||||| | |||||||||| ||||||||||||||| |||||     
T  45435 acatccctaacaaagtcatgtatgtacttaaacccgagaagctccttacaccgaacgacatgctccccaaaagtatcaaggcacaccttacgacaaacag 45336  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
      || || ||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||    
T  45335 ggcacacctcatcaataggaaatattggaatcataaggtgatatctaaggatagtatgatactcc 45271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 61 - 225
Target Start/End: Complemental strand, 4206362 - 4206198
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    ||||||||||||||||||||| ||||||||||||   ||| ||||||||| ||||| | ||||| | ||||||||||||||||| |||||||| |||||     
T  4206362 acatccctaacaaagtcatgtatgtacttaaagctcggaaactccttacagtgaacggcatgctccccaaaagtatccaggcacgccttacgacaaacag 4206263  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
      ||  | ||||||| |||||||||||||||| |||||||| |||||||||||||||| ||||||    
T  4206262 ggcacgcctcatcaataggaaatagtggaatcgtaaggcgagatctaaggatagtacggtactcc 4206198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 61 - 225
Target Start/End: Original strand, 32116030 - 32116194
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    ||||||||||||||||||||| |||||||||||    ||||||||| ||||||| |   ||||| | |||||||||||||||||||||||||| |||||     
T  32116030 acatccctaacaaagtcatgtatgtacttaaagttgggaagctcctcacaatgagcgacatgctccccaaaagtatccaggcacaccttacgacaaacag 32116129  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
      || |||||||||| |||||||||| |||||||||| | ||||||| |||||||| | ||||||    
T  32116130 ggcacacatcatcaataggaaatagttgaatcataagacaatatctagggatagtatggtactcc 32116194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 62 - 223
Target Start/End: Complemental strand, 29337851 - 29337690
Alignment:
Q  62 catccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaa 161  Q
    ||||||||||||||| |||| |||||||||||| | |||||| |||||||||||||  ||||| | || |||||||||||||  |||||||| |||||      
T  29337851 catccctaacaaagttatgtgtgtacttaaagctaggaagctacttacaatgaactacatgctccccacaagtatccaggcatgccttacgagaaacatg 29337752  T
Q  162 acatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatact 223  Q
     ||  | |||| || || |||||| ||||||||||||||||||||||||||| || ||||||    
T  29337751 gcacgcctcattaatagaaaatagaggaatcataaggcgatatctaaggataatatgatact 29337690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 34304791 - 34305002
Alignment:
Q  14 ctccttcttcactgatactcccacctgcctaaatatatnnnnnnntgacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatg 113  Q
    |||||||||||||||||||||  ||||||| |||||||         ||||||||||||||||||||  ||||||||||||| |||||||||||||| ||    
T  34304791 ctccttcttcactgatactcctgcctgcctgaatatataaaaaaagtacatccctaacaaagtcatgcatgtacttaaagccgagaagctccttacagtg 34304890  T
Q  114 aactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggata 213  Q
    |||   ||||| | ||||||||||||| ||   ||||||| ||  |   || || ||||||| | |||||| |||||||||||| |  |||| |||||||    
T  34304891 aacaacatgctccccaaaagtatccagacatgtcttacgacaagtagggcaaacctcatcaatatgaaataatggaatcataagacagtatcgaaggata 34304990  T
Q  214 gtacgatactcc 225  Q
    ||||| ||||||    
T  34304991 gtacggtactcc 34305002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 20693368 - 20693311
Alignment:
Q  59 tgacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaac 116  Q
    ||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  20693368 tgacaaccctaataaagtcatgtttgtacttaaagtcaagaagctccttacaatgaac 20693311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 28008806 - 28008727
Alignment:
Q  60 gacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatcca 139  Q
    ||||||||||| |||||||||||||||||||||| ||  |||||||||||||| || || ||||| | ||||||||||||    
T  28008806 gacatccctaataaagtcatgtttgtacttaaagtcagaaagctccttacaataaattgcatgctccccaaaagtatcca 28008727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 357542 - 357392
Alignment:
Q  1 agttcacagggacctccttcttcactgatactcccacctgcctaaatatatnnnnnnntgacatccctaacaaagtcatgtttgtacttaaagccaagaa 100  Q
    |||||||| || ||||||||||||||||||||||| || |||| |||||||       | ||||||||||||||| ||||  ||||||| || |||  ||    
T  357542 agttcacaagggcctccttcttcactgatactcccgcccgcctgaatatatcaaaaagt-acatccctaacaaaggcatgcatgtactttaaaccagaaa 357444  T
Q  101 gctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacg 152  Q
     |||||||||||||||   ||||| | ||||||||||||| ||| |||||||    
T  357443 tctccttacaatgaacgacatgctccccaaaagtatccagacacgccttacg 357392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 14538706 - 14538655
Alignment:
Q  60 gacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaa 111  Q
    |||||| |||||||||| |||| ||||||||||| |||||||||||||||||    
T  14538706 gacatctctaacaaagttatgtatgtacttaaagtcaagaagctccttacaa 14538655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 32120310 - 32120413
Alignment:
Q  101 gctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcg 200  Q
    |||||||| ||||||  | ||||| | ||||||||||||| |||||||||||| ||| |   || || | ||||| |||||||| |||||||||||||||    
T  32120310 gctccttataatgaaaggaatgctccccaaaagtatccagacacaccttacgacaaatagggcacacctgatcaataggaaatattggaatcataaggcg 32120409  T
Q  201 atat 204  Q
    ||||    
T  32120410 atat 32120413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 23911037 - 23910992
Alignment:
Q  76 tcatgtttgtacttaaagccaagaagctccttacaatgaactgtat 121  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||    
T  23911037 tcatgtttgtacttaaagccgggaagctcctaacaatgaactgtat 23910992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 61 - 217
Target Start/End: Original strand, 16957877 - 16958032
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    |||||||||| |||||||||| ||||||||||| || |||||||||||||||||||  |||||| | |||||||||| |||||| |||||||| ||||||    
T  16957877 acatccctaaaaaagtcatgtatgtacttaaagtcaggaagctccttacaatgaacgatatgctccccaaaagtatctaggcacgccttacgacaaacaa 16957976  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtac 217  Q
      || || ||||||| || |||||||||||||||||||| |||||||||||||||||    
T  16957977 ggcacacctcatcaatagaaaatagtggaatcataaggc-atatctaaggatagtac 16958032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 225
Target Start/End: Original strand, 53170840 - 53171003
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    ||||||||| ||||||||||| |||||||| |||   |||||||||||||||||||   ||||| | ||||||||| ||||||| |||||||| |||||     
T  53170840 acatcccta-caaagtcatgtctgtacttagagcggggaagctccttacaatgaacgacatgctccccaaaagtattcaggcacgccttacgacaaacag 53170938  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
      || || ||||||| || ||||||||||||| ||||| ||||||||| ||||||||||||||||    
T  53170939 ggcacacctcatcaatagaaaatagtggaatcgtaaggtgatatctaaagatagtacgatactcc 53171003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 225
Target Start/End: Complemental strand, 56461879 - 56461716
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    ||||||||||||||||||    | |||||||| ||| ||||||||||||| |||||   ||||| | ||||| ||||||||||||||||||||||||||     
T  56461879 acatccctaacaaagtcacacctatacttaaaaccaggaagctccttacagtgaacgacatgctccccaaaa-tatccaggcacaccttacgaaaaacag 56461781  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
      || || ||||||| || |||||||||||||||||||  |||||||||||| ||||||||||||    
T  56461780 ggcacacctcatcaatagaaaatagtggaatcataaggttatatctaaggatggtacgatactcc 56461716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 3330232 - 3330389
Alignment:
Q  1 agttcacagggacctccttcttcactgatactcccacctgcctaaatatatnnnnnnntgacatccctaacaaagtcatgtttgtacttaaagccaagaa 100  Q
    ||||||||||  ||||||||||||||||||||||| |  |||| |||||||       | ||||||||||||||||||||  |||||||||||||  |||    
T  3330232 agttcacaggtgcctccttcttcactgatactcccgctcgcctgaatatatcaaaaagt-acatccctaacaaagtcatgcctgtacttaaagccgggaa 3330330  T
Q  101 gctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaaca 159  Q
    |||||||||||||||  | ||||| | ||||||||| ||| ||| |||||||| |||||    
T  3330331 gctccttacaatgaatggcatgctccccaaaagtatacagacacgccttacgacaaaca 3330389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 48505870 - 48505800
Alignment:
Q  155 aaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
    ||||| |||| |||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||    
T  48505870 aaacagaacacacatcatcaatatgaaatagtggaatcataaggcgatatctaaggataatacgatactcc 48505800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 34952465 - 34952611
Alignment:
Q  13 cctccttcttcactgatactcccacctgcctaaatatatnnnnnnntgacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaat 112  Q
    ||||||||||||||||||||| | || |||| |||||||       ||||||||||||||||||||||| |||||||||||   |||||||||||||| |    
T  34952465 cctccttcttcactgatactctcgcccgccttaatatatcaaaaa-tgacatccctaacaaagtcatgtatgtacttaaagtagagaagctccttacatt 34952563  T
Q  113 gaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
     ||| | ||||| | ||||||||| ||| |||  ||||||| ||||||    
T  34952564 aaacggcatgctccccaaaagtattcagacacgtcttacgacaaacaa 34952611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 25504635 - 25504690
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaac 116  Q
    ||||| ||||||||||||||||||||||||||| || |||||||||||||||||||    
T  25504635 acatctctaacaaagtcatgtttgtacttaaagtcaggaagctccttacaatgaac 25504690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 50000691 - 50000612
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccag 140  Q
    |||||| |||||||||||||| |||| |||||| |  ||||||||||||||||||| | ||||||| |||||||||||||    
T  50000691 acatccttaacaaagtcatgtctgtatttaaagtcgggaagctccttacaatgaacggcatgcttcccaaaagtatccag 50000612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 25706851 - 25706940
Alignment:
Q  63 atccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacga 153  Q
    ||||||||||||||||||  ||||||||||| | | ||||||||||| ||||||  || ||| | |||||||||||| |||||||||||||    
T  25706851 atccctaacaaagtcatgcatgtacttaaagtcgataagctccttacgatgaacaata-gctccccaaaagtatccatgcacaccttacga 25706940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 48506806 - 48506751
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaac 116  Q
    |||||| |||||||||||||| ||||||||||| || ||||||||| |||||||||    
T  48506806 acatccgtaacaaagtcatgtatgtacttaaagtcaggaagctcctaacaatgaac 48506751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 132726 - 132781
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaac 116  Q
    |||||||||||||||||||| || |||||||| ||   ||||||||||||||||||    
T  132726 acatccctaacaaagtcatgattatacttaaaaccggaaagctccttacaatgaac 132781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 12918092 - 12917996
Alignment:
Q  101 gctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataag 197  Q
    |||||||||||||||    ||| ||| ||||||||||||| |||||||||||| |||||   || |  ||||||| || |||||||| |||||||||    
T  12918092 gctccttacaatgaatgacatgtttctcaaaagtatccagacacaccttacgacaaacatggcacatctcatcaatagaaaatagtgaaatcataag 12917996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 28882921 - 28882861
Alignment:
Q  59 tgacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgt 119  Q
    ||||||| ||||||||||||||  ||||||| ||||  ||||||| ||||||| |||||||    
T  28882921 tgacatctctaacaaagtcatgcatgtacttgaagcttagaagcttcttacaaagaactgt 28882861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 61 - 225
Target Start/End: Original strand, 4501599 - 4501763
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    |||||||||| |||||| ||| ||||||||||| |  |||||||||||||||||||   ||| | | ||||||||||||||||| |||||||| |||||     
T  4501599 acatccctaataaagtcgtgtgtgtacttaaagtcgggaagctccttacaatgaacgacatggtccccaaaagtatccaggcacgccttacgacaaacat 4501698  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
     ||| || ||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||    
T  4501699 gacacacctcatcaatagaaaataatggaatcataagacgatatctaaggatagtacgatactcc 4501763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 225
Target Start/End: Original strand, 24527931 - 24528095
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    |||||||| |||||||||||| ||||||||||||| | ||||||||| |||||||| | ||||| | |||||||||||||| || |||||||| |||||     
T  24527931 acatccctcacaaagtcatgtctgtacttaaagccgaaaagctccttgcaatgaacggcatgctccccaaaagtatccaggtacgccttacgacaaacag 24528030  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
      ||  | ||| ||| | |||||||||||||||||||||||||||||| ||||||| ||||||||    
T  24528031 ggcacccctcaacaataagaaatagtggaatcataaggcgatatctaatgatagtatgatactcc 24528095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 10905397 - 10905607
Alignment:
Q  13 cctccttcttcactgatactcccacctgcctaaatatatnnnnnnntgacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaat 112  Q
    ||||||||||||||||||||||| ||| |||  ||||||       | |||| ||||| ||| ||||  || |||||||| || ||||||||||||||||    
T  10905397 cctccttcttcactgatactcccgccttcctggatatatcaaaaagt-acattcctaaaaaactcatacttatacttaaacccgagaagctccttacaat 10905495  T
Q  113 gaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggat 212  Q
    ||||   ||||| | ||||||||||||||||  |||||||| ||| |   || || |||||||   |||||||||||||||||||  |||||||||||||    
T  10905496 gaacaacatgctccccaaaagtatccaggcaagccttacgacaaatagggcacacctcatcaatgagaaatagtggaatcataagatgatatctaaggat 10905595  T
Q  213 agtacgatactc 224  Q
    ||||||||||||    
T  10905596 agtacgatactc 10905607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 32585492 - 32585650
Alignment:
Q  65 ccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaaca 164  Q
    ||||||||||||||||  ||||||||||| | ||||||||||||| ||||||   ||||| | ||||||||||||| ||  |||||||| ||| |   ||    
T  32585492 ccctaacaaagtcatgcctgtacttaaagtcgagaagctccttaccatgaacgacatgctccccaaaagtatccagacatgccttacgacaaatagggca 32585591  T
Q  165 tacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatact 223  Q
     || |||| || ||||||||||||||||||||| ||| |||||||||||||||| ||||    
T  32585592 cacctcattaataggaaatagtggaatcataagacgaaatctaaggatagtacggtact 32585650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 61 - 204
Target Start/End: Complemental strand, 45613608 - 45613465
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaa 160  Q
    ||||||||||||||||| ||| |||||| ||||||  |||| |||||||||||||| | ||||| | ||||||||||||  |||  ||||| | |||||     
T  45613608 acatccctaacaaagtcgtgtctgtactgaaagccgggaagttccttacaatgaacggcatgctccccaaaagtatccatacacgtcttacaataaacag 45613509  T
Q  161 aacatacatcatcaacaggaaatagtggaatcataaggcgatat 204  Q
     ||| || ||||||| ||||||||||||||||||||| ||||||    
T  45613508 gacacacctcatcaataggaaatagtggaatcataagacgatat 45613465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 28517053 - 28516975
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatcca 139  Q
    |||||||||||||||||||| |||||||||||||  ||||||||||||||||||||   |||||||| |||||||||||    
T  28517053 acatccctaacaaagtcatgcttgtacttaaagctgagaagctccttacaatgaacgacatgcttcataaaagtatcca 28516975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 225
Target Start/End: Original strand, 47679420 - 47679629
Alignment:
Q  14 ctccttcttcactgatactcccacctgcctaaatatatnnnnnnntgacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatg 113  Q
    |||||||||||||||||| ||| || |||| |||||||       | ||||||||||||||||| || | |||||||||| |  |||||| ||||||||     
T  47679420 ctccttcttcactgatacccccgcccgcctgaatatatcaaaaagt-acatccctaacaaagtcgtgat-gtacttaaagtcgggaagcttcttacaata 47679517  T
Q  114 aactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggata 213  Q
    |||    |||| | |||||||||||| || | |||||||| ||||| | || || || |||| || ||||||||||||||| |||| ||||||| |||||    
T  47679518 aacgacgtgctccccaaaagtatccaagcgcgccttacgacaaacagagcacacctcgtcaatagcaaatagtggaatcatgaggcaatatctatggata 47679617  T
Q  214 gtacgatactcc 225  Q
    ||||| ||||||    
T  47679618 gtacgttactcc 47679629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 225
Target Start/End: Original strand, 5827662 - 5827759
Alignment:
Q  128 caaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
    ||||||||||||| ||| |||||||| |||||   || || ||||||| | ||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  5827662 caaaagtatccagacacgccttacgacaaacagggcacacctcatcaataagaaatagtggaatcataagacgatatcgaaggatagtacggtactcc 5827759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 102 - 205
Target Start/End: Original strand, 43857247 - 43857349
Alignment:
Q  102 ctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcatcaacaggaaatagtggaatcataaggcga 201  Q
    ||||||||||||||||| ||||| | |||||||||| || |||||||||||| |||||| | | || ||||||| || ||| |||||||||||||  |||    
T  43857247 ctccttacaatgaactgcatgctcc-caaaagtatctagacacaccttacgacaaacaagaaacacctcatcaatagaaaacagtggaatcataacacga 43857345  T
Q  202 tatc 205  Q
    ||||    
T  43857346 tatc 43857349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 225
Target Start/End: Original strand, 4175577 - 4175724
Alignment:
Q  85 tacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaacaaaacatacatcat-------caaca 177  Q
    ||||||||| | |||||||||||||||| ||||| ||||| | |||||||||  |||||| ||||| ||||||||   || ||  |||       ||| |    
T  4175577 tacttaaagtcgagaagctccttacaataaactgcatgctacccaaaagtatttaggcacgccttaggaaaaacagggcacaccacatcaatagccaata 4175676  T
Q  178 ggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
    || |||||||||||||||||||  ||||||||||||||||| ||||||    
T  4175677 gggaatagtggaatcataaggcactatctaaggatagtacggtactcc 4175724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 19277634 - 19277725
Alignment:
Q  61 acatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacga 153  Q
    ||||||||||||||||||||| ||| ||||||| |   || || ||||||||||||   ||||| | ||||||||||||| ||| ||||||||    
T  19277634 acatccctaacaaagtcatgtatgt-cttaaagtcggaaaactacttacaatgaacgacatgctccccaaaagtatccagacacgccttacga 19277725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 225
Target Start/End: Original strand, 20061 - 20226
Alignment:
Q  60 gacatccctaacaaagtcatgtttgtacttaaagccaagaagctccttacaatgaactgtatgcttcacaaaagtatccaggcacaccttacgaaaaaca 159  Q
    ||||| ||||||||||||| || |||||||| ||| | ||||||||||||||||||||||||||| | ||| ||||||||||||| ||||| || ||| |    
T  20061 gacattcctaacaaagtcaagtatgtacttatagctaggaagctccttacaatgaactgtatgctccccaatagtatccaggcacgccttatgacaaaaa 20160  T
Q  160 aaacatacatcatcaacaggaaatagtggaatcataaggcgatatctaaggatagtacgatactcc 225  Q
       || || ||||||| |||||||| || |||||||||| ||||||||||||||| || |||||||    
T  20161 gggcacacctcatcaataggaaataatgtaatcataaggtgatatctaaggatagcaccatactcc 20226  T

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