View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9880_low_16 (Length: 224)
Name: NF9880_low_16
Description: NF9880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9880_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 7623135 - 7623329
Alignment:
| Q |
20 |
gtggtcaagagtaagatcaaaagagagtgagttatcattcatcatctgcaaaaatatatcgatgatatctgcaacttcttgttccttggttgtaggcttt |
119 |
Q |
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| T |
7623135 |
gtggtcaagagtaagatcaaaagagagtgagttatcattcatcatctgcaaaaatatatcaatgatatctgcaacttcttgctccttggttttaggcttt |
7623234 |
T |
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| Q |
120 |
gttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgcttct |
214 |
Q |
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| T |
7623235 |
gttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattct |
7623329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 7636227 - 7636416
Alignment:
| Q |
20 |
gtggtcaagagtaagatcaaaagagagtgagttatcattcatcatctgcaaaaatatatcgatgatatctgcaacttcttgttccttggttgtaggcttt |
119 |
Q |
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|||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||| || ||||| | |||||||||||||| ||| ||||| || |
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| T |
7636227 |
gtggtcaagagtgagatcaaaagagagtgagtgatcattcatcatctgcaataagatatcaataatatcatctacttcttgttccttagttttaggcctt |
7636326 |
T |
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| Q |
120 |
gttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttg |
209 |
Q |
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| T |
7636327 |
gctgaattatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaatgttttatcaagcctcccaagagttcctttg |
7636416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 7629444 - 7629633
Alignment:
| Q |
20 |
gtggtcaagagtaagatcaaaagagagtgagttatcattcatcatctgcaaaaatatatcgatgatatctgcaacttcttgttccttggttgtaggcttt |
119 |
Q |
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|||||| ||||| ||||||||||||||||| | |||||||||||| || || || ||||| || ||||| | |||||||||||||| ||| ||||| || |
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| T |
7629444 |
gtggtcgagagtgagatcaaaagagagtgaatgatcattcatcatttgtaataagatatcaataatatcatctacttcttgttccttagttttaggcctt |
7629543 |
T |
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| Q |
120 |
gttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttg |
209 |
Q |
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| T |
7629544 |
gctgaataatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaacgttttatcaagcctcccaagtgttcctttg |
7629633 |
T |
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