View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9880_low_19 (Length: 211)

Name: NF9880_low_19
Description: NF9880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9880_low_19
NF9880_low_19
[»] chr6 (25 HSPs)
chr6 (1-193)||(5688801-5688996)
chr6 (1-176)||(5177941-5178110)
chr6 (1-176)||(5279766-5279938)
chr6 (4-102)||(5242504-5242602)
chr6 (1-126)||(5126597-5126722)
chr6 (1-102)||(5427102-5427203)
chr6 (1-100)||(5100812-5100911)
chr6 (1-100)||(5135913-5136012)
chr6 (1-94)||(5398248-5398341)
chr6 (1-97)||(5346231-5346327)
chr6 (1-176)||(5065367-5065542)
chr6 (1-111)||(5098413-5098523)
chr6 (1-98)||(23127306-23127403)
chr6 (1-95)||(5180773-5180867)
chr6 (1-100)||(5351602-5351701)
chr6 (1-95)||(5283223-5283317)
chr6 (1-95)||(5439213-5439307)
chr6 (1-100)||(5156007-5156106)
chr6 (1-100)||(5372299-5372398)
chr6 (1-102)||(5072674-5072775)
chr6 (4-93)||(5253738-5253827)
chr6 (1-100)||(2939117-2939216)
chr6 (1-95)||(5256113-5256207)
chr6 (5-98)||(5124439-5124532)
chr6 (9-69)||(5334395-5334455)
[»] chr4 (7 HSPs)
chr4 (1-123)||(4122615-4122737)
chr4 (1-173)||(25569042-25569217)
chr4 (1-135)||(4132577-4132708)
chr4 (56-102)||(7884147-7884193)
chr4 (11-100)||(4319296-4319385)
chr4 (57-102)||(4346621-4346666)
chr4 (57-102)||(4362810-4362855)
[»] chr3 (4 HSPs)
chr3 (1-94)||(47985393-47985486)
chr3 (1-94)||(48003967-48004060)
chr3 (1-94)||(47994680-47994773)
chr3 (1-94)||(48013252-48013345)
[»] chr7 (1 HSPs)
chr7 (1-102)||(36212913-36213014)
[»] scaffold0294 (1 HSPs)
scaffold0294 (1-93)||(7878-7970)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 8e-94; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 5688996 - 5688801
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5688996 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 5688897  T
Q  101 atccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtg---tagtggtgatgaagatgaatgctattaagagaggtctctt 193  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  5688896 attcgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtagtggtgatgaagatgaatgctattaagagaggtctctt 5688801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 5177941 - 5178110
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 100  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5177941 atcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 5178040  T
Q  101 atccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgct 176  Q
    ||  | ||||| ||||||||||| |||||||||||||||      |||||||||||||||||||||||||||||||    
T  5178041 attggagaaaaaatggagcaatgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaatgct 5178110  T

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Target: chr6; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 5279766 - 5279938
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 100  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5279766 atcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 5279865  T
Q  101 atccgtgaaaatatggagcaa---tgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgct 176  Q
    ||  | ||||| |||||||||   || |||||||||||||||      |||||||||||||||||||||||||||||||    
T  5279866 attggagaaaaaatggagcaatattgccaagaacaagaagaa------attgtgtgtagtggtgatgaagatgaatgct 5279938  T

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Target: chr6; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 5242602 - 5242504
Alignment:
Q  4 aagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 102  Q
    ||||||||||||| |||||||||||||||| |||| ||||||||| ||| |||||||||||||||| |||  |||||||||||||||||||||||||||    
T  5242602 aagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatatgatgaaccaat 5242504  T

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Target: chr6; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 5126722 - 5126597
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 100  Q
    ||||||||||||| || |||||||||| ||| |||||  ||||||| | |||||||||||||||||||| ||| | ||||||||| ||||||||||||||    
T  5126722 atcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtttatctcatatatgatgaacca 5126623  T
Q  101 atccgtgaaaatatggagcaatgtca 126  Q
    ||  |||||| |||| ||||||||||    
T  5126622 attggtgaaactatgaagcaatgtca 5126597  T

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Target: chr6; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 5427102 - 5427203
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 100  Q
    |||||||||||||||| |||||||| ||||||| |||| ||||||||| ||| ||||| |||||| ||| |||  |||||||||||||||||||||||||    
T  5427102 atcaagtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtttatctcgtatatgatgaacca 5427201  T
Q  101 at 102  Q
    ||    
T  5427202 at 5427203  T

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Target: chr6; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 5100911 - 5100812
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 100  Q
    |||||||||||||||  |||||||||||||||| |||  ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| |||||||||    
T  5100911 atcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatgaacca 5100812  T

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Target: chr6; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 5136012 - 5135913
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 100  Q
    |||||||||||||||  |||||||||||||||| |||  ||||||||| ||| ||||||||||||| || ||| |||||||||||||||| |||||||||    
T  5136012 atcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatgaacca 5135913  T

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Target: chr6; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 5398248 - 5398341
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgat 94  Q
    |||||||||||||||| |||||||||| |||||||| | |||||| || || | ||||||||||||||| |||||||||||||| |||||||||    
T  5398248 atcaagtatagaacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 5398341  T

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Target: chr6; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 5346231 - 5346327
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaa 97  Q
    |||||||||||||||| |||||||||||||||||||   |||| |||| || ||||||||||||||||| ||| || |||||||| |||||||||||    
T  5346231 atcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatttatctcatatatgatgaa 5346327  T

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Target: chr6; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 5065542 - 5065367
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 100  Q
    ||||||||| |||||| | || ||||||||  |||||  ||||||||| ||||||||| |||||||||  ||||||||||||||| ||||||||||||||    
T  5065542 atcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtttatctcatatatgatgaacca 5065443  T
Q  101 atccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaatgct 176  Q
    ||   ||||||   |||| | ||||| | ||||||  | |||| ||||||  |||| ||||||||| |||||||||    
T  5065442 attgctgaaaagggggaggagtgtcatgcacaagataagaatgttattgttagtagcggtgatgaaaatgaatgct 5065367  T

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Target: chr6; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 5098413 - 5098523
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 100  Q
    |||||||||||||||| ||||||||||||||||  ||  |||||| || ||| ||||||||||||| || ||| |||||||||| ||||||||||||| |    
T  5098413 atcaagtatagaacctggtaacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtatatgatgaacaa 5098512  T
Q  101 atccgtgaaaa 111  Q
    ||  |||||||    
T  5098513 attggtgaaaa 5098523  T

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Target: chr6; HSP #13
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 23127403 - 23127306
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaac 98  Q
    |||||||  ||||||| |||||||| |||||||||||   |||||||| || |||||| |||||||||| |||||||||||||| |||||||||||||    
T  23127403 atcaagtgcagaacctggtaacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatgaac 23127306  T

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Target: chr6; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 5180867 - 5180773
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 95  Q
    |||||| ||||||||  |||||||||||||||| |||| ||||||||| ||  |||||||||||||||| ||| || ||||||| ||||||||||    
T  5180867 atcaagcatagaacccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagcaatttatctggtatatgatg 5180773  T

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Target: chr6; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 5351602 - 5351701
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 100  Q
    |||||||||||||||  ||||||||||||||||  ||| |||||| || || | || ||||||||| || |||  |||||||||||||||||||||||||    
T  5351602 atcaagtatagaacccagtaacaaagtggaggtcatttttgttttcgagaatgattgcattgtgaaaaagacagtagtttatctcgtatatgatgaacca 5351701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 5283317 - 5283223
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 95  Q
    ||||||||| |||||  ||||||||||||||||  | | ||||||||| ||| |||||||||||||||| ||| || ||||||| ||||||||||    
T  5283317 atcaagtatcgaaccaggtaacaaagtggaggtcatatttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggtatatgatg 5283223  T

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Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 5439213 - 5439307
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 95  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||  | || | ||||||||  || || ||| ||| |||||||||||||||||    
T  5439213 atcaagtatagaacctggtaacaaagtggaggttgtttttgttttcaagaatgatttcattgccaaaaagacagcagcttatctcgtatatgatg 5439307  T

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Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 5156106 - 5156007
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 100  Q
    ||||||| |||||||| ||||||||||||||||   || |||||| || |    ||||||||||||||| |||||||||||||| ||||| |||||||||    
T  5156106 atcaagtctagaacctggtaacaaagtggaggtccattttgttttcgagattaatttcattgtgaagaagacaacagtttatcttgtatacgatgaacca 5156007  T

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Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 5372299 - 5372398
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 100  Q
    ||||||| |||||||| |||||||||||||| |   || |||| | || || | ||||||||||||||| |||||| ||||||||||||| |||||||||    
T  5372299 atcaagtctagaacctggtaacaaagtggagatccattttgttctcgagaatgatttcattgtgaagaagacaacaatttatctcgtatacgatgaacca 5372398  T

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Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 5072775 - 5072674
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 100  Q
    |||||||||||| ||| ||||| |||||||||||||   |||| |||| |||| |||||||||||| || |||| | |||||||| |||| |||||| ||    
T  5072775 atcaagtatagagcctggtaaccaagtggaggttgtcgttgttgttgagaacgatttcattgtgaaaaagacaataatttatctcatatacgatgaatca 5072676  T
Q  101 at 102  Q
    ||    
T  5072675 at 5072674  T

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Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 5253738 - 5253827
Alignment:
Q  4 aagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatga 93  Q
    |||||| |||||| | || ||||||||| |||||  ||||||||| ||| |||||||||||||||  || |||||||||||| |||||||    
T  5253738 aagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttatctcatatatga 5253827  T

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Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 2939117 - 2939216
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 100  Q
    ||||||| || ||||| ||||||||||||||||   || |||| | || || | || ||||||||||||  ||||| |||||||||||||||||||||||    
T  2939117 atcaagtctataacctggtaacaaagtggaggtccattttgttatcgagaatgattgcattgtgaagaaggcaacaatttatctcgtatatgatgaacca 2939216  T

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Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 5256207 - 5256113
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 95  Q
    ||||||||| |||||  |||||||||||||||| || | ||||||  | || | ||||||||||||||| ||| || ||||| | ||||||||||    
T  5256207 atcaagtattgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggtatatgatg 5256113  T

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Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 5124532 - 5124439
Alignment:
Q  5 agtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaac 98  Q
    |||||||||||| |||| ||||||||  |||||| ||||||| | ||| | |||||||||||| | |||||| | ||| |  ||||||||||||    
T  5124532 agtatagaacctggtaataaagtggaatttgtttttgtttttaagaaccgcttcattgtgaaggagacaacaatgtatattatatatgatgaac 5124439  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 5334395 - 5334455
Alignment:
Q  9 tagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaa 69  Q
    |||||||| |||||||||||||||| |||| |||||| || || | ||||||| |||||||    
T  5334395 tagaacctggtaacaaagtggaggtcgtttttgttttcgagaatgatttcattttgaagaa 5334455  T

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Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 4122737 - 4122615
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 100  Q
    ||||| ||| |||||| || ||||||||||| |||||  ||||||||  ||| |||||||||||| ||| ||| ||||||||||| ||||||||||||||    
T  4122737 atcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatatgatgaacca 4122638  T
Q  101 atccgtgaaaatatggagcaatg 123  Q
    ||| ||||||| || ||||||||    
T  4122637 atcggtgaaaaaatagagcaatg 4122615  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 25569042 - 25569217
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaa---cggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaa 97  Q
    |||||||||||||||| | ||||||||||||||||||| |||||||||      | ||||||  |||||||| |||||||||||||||||||| ||||||    
T  25569042 atcaagtatagaacctggaaacaaagtggaggttgtttttgtttttgagtggcgcagtttcaaagtgaagaatacaacagtttatctcgtatacgatgaa 25569141  T
Q  98 ccaatccgtgaaaatatggagcaatgtcaagaacaagaagaaaatgatattgtgtgtagtggtgatgaagatgaat 173  Q
    | |||  | ||||  ||||||||| |||||  |  ||||||||||| |||||| | || |||||||||| ||||||    
T  25569142 ctaattggcgaaataatggagcaaagtcaaacatcagaagaaaatgctattgtttttattggtgatgaaaatgaat 25569217  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 4132708 - 4132577
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 100  Q
    ||||| ||| |||||| || ||||||| ||| |||||   |||||||  ||| |||||||||||| ||| ||| ||||||||||| ||||||||||||||    
T  4132708 atcaaatatggaacctggtgacaaagtcgagattgtt---gtttttgggaacagtttcattgtgatgaagacagcagtttatctcatatatgatgaacca 4132612  T
Q  101 atccgtgaaaatatggagcaatgtcaagaacaaga 135  Q
    ||  |||||||| ||| ||||||||| | ||||||    
T  4132611 attggtgaaaatttggggcaatgtcatgcacaaga 4132577  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 56 - 102
Target Start/End: Complemental strand, 7884193 - 7884147
Alignment:
Q  56 ttcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 102  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||    
T  7884193 ttcattgtgaagaaaacaacaatttatcttgtctatgatgaaccaat 7884147  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 4319385 - 4319296
Alignment:
Q  11 gaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 100  Q
    |||||| || |||| |||||| |||||   |||||||  ||| |||||||||||| ||| ||| ||||||||||| ||||||||||||||    
T  4319385 gaacctggtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatatatgatgaacca 4319296  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 4346621 - 4346666
Alignment:
Q  57 tcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 102  Q
    ||||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  4346621 tcattgtgacgaagacagcagtttatctcatatatgatgaaccaat 4346666  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 4362810 - 4362855
Alignment:
Q  57 tcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaat 102  Q
    ||||||||| ||| ||| ||||||||||| ||||||||||||||||    
T  4362810 tcattgtgacgaagacagcagtttatctcatatatgatgaaccaat 4362855  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 47985486 - 47985393
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgat 94  Q
    |||||||||||||||  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||||||    
T  47985486 atcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgat 47985393  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 48004060 - 48003967
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgat 94  Q
    |||||||||||||||  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||||||    
T  48004060 atcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgat 48003967  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 47994773 - 47994680
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgat 94  Q
    ||||||||||||| |  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||||||    
T  47994773 atcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgat 47994680  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 48013345 - 48013252
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgat 94  Q
    ||||||||||||| |  |||||||||||||||| |||  ||||||||| || ||||||||||||||||  | | |||||||||| |||||||||    
T  48013345 atcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatatgat 48013252  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 36213014 - 36212913
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaacca 100  Q
    |||||||||||||||| || | ||| |||||||||||  ||||||||| |||  ||||||||||||||| ||| |  |||||||| | ||||||||||||    
T  36213014 atcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgatttatctcatttatgatgaacca 36212915  T
Q  101 at 102  Q
    ||    
T  36212914 at 36212913  T

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Target: scaffold0294 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 7970 - 7878
Alignment:
Q  1 atcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgacaacggtttcattgtgaagaaaacaacagtttatctcgtatatga 93  Q
    ||||||| |||||||  | ||||||||||||||||||  ||||||||   |||||||||||| |||  |||||||| |||||||  |||||||    
T  7970 atcaagtgtagaacccggaaacaaagtggaggttgttgttgtttttggggacggtttcattgcgaaagaaacaacaatttatcttatatatga 7878  T

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