View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9880_low_20 (Length: 204)
Name: NF9880_low_20
Description: NF9880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9880_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 31543285 - 31543457
Alignment:
| Q |
17 |
aggtatcggtccttgaagaaaattgttgtccaaagagatgttcttcaagctagagagagtgcatagagaatgtggaaccaaaccaactaattgattggaa |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31543285 |
aggtatcggtccttgaagaaaattgatgtccaaagagatgttcttcaagctagagagagtgcatagcgaatgtggaaccaaaccaactaattgattggaa |
31543384 |
T |
|
| Q |
117 |
tgaagctgaagatcaaacaaattagtggaactagacatgttaggaattggacctgcgaacacgttgttgttaa |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31543385 |
tgaagctgaagatcaaacaaattagtggaactagacatgttaggaattggacctgcgaacatgttgttgttaa |
31543457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 31551365 - 31551190
Alignment:
| Q |
14 |
cataggtatcggtccttgaagaaaattgttgtccaaagagatgttcttcaagctagagagagtgcatagagaatgtggaaccaaaccaactaattgattg |
113 |
Q |
| |
|
||||||||| ||||||| |||| ||||||||||||||||||||| ||||||||| ||||| | | | ||| |||||||||||| | ||| ||| |
|
|
| T |
31551365 |
cataggtattggtccttcaagattattgttgtccaaagagatgttggtcaagctagggagagagaacaacgaagatggaaccaaacctattaaaccattt |
31551266 |
T |
|
| Q |
114 |
gaatgaagctgaagatcaaacaaattagtggaactagacatgttaggaattggacctgcgaacacgttgttgttaa |
189 |
Q |
| |
|
|| ||||| || ||||||||||||| ||||||| | |||||||||||||||| ||| | |||| |||||||||||| |
|
|
| T |
31551265 |
gagtgaagttggagatcaaacaaatgagtggaatttgacatgttaggaattgtaccagtgaacgcgttgttgttaa |
31551190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 32357578 - 32357526
Alignment:
| Q |
24 |
ggtccttgaagaaaattgttgtccaaagagatgttcttcaagctagagagagt |
76 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||| |||||| |
|
|
| T |
32357578 |
ggtccttgaagaaaattgtggtccaaagagatgttcttcaagttagggagagt |
32357526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 32350881 - 32350958
Alignment:
| Q |
24 |
ggtccttgaagaaaattgttgtccaaagagatgttcttcaagctagagagagtgcatagagaatgtggaaccaaacca |
101 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| |||||||| ||| ||||||| | | |||| |||||| ||||||| |
|
|
| T |
32350881 |
ggtccttaaagaaaattgtggtccaaagagatgctcttcaagttagggagagtgaacaaagaaggtggaatcaaacca |
32350958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University