View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9880_low_4 (Length: 397)
Name: NF9880_low_4
Description: NF9880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9880_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 65 - 387
Target Start/End: Complemental strand, 36532258 - 36531936
Alignment:
| Q |
65 |
ttaattttgttgtttatccatacgtgacctaatgaatgattgttgttttgttcctttcaattgttattccttttctttgttttatggattaggaacatga |
164 |
Q |
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| T |
36532258 |
ttaattatgttgtttatccatacgtgacctaatgaatgattgttgttttgttcctttcaattgttattccttttctttgttttatggattaggaacatga |
36532159 |
T |
|
| Q |
165 |
gatgtcaagtagtagagtgtctcaaaatacggtcatagaggatgcagagattgatgaatatagcattaatgatagtcctattgagcaagtgaggctaaca |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36532158 |
gatgtcaagtagtagagtgtctcaaaatacggtcatagaggatgcagagattgatgaatatagcattaatgatagtcctattgagcaagtgaggctaaca |
36532059 |
T |
|
| Q |
265 |
gttccgatcactgatgacccttctcagccagcgctaacattccggacatgggttctagggttagcatcatgtattctccttgcatttgtgaaccagtttt |
364 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36532058 |
gttccgatcaccgatgacccttctcagccagcgctaacattccggacatgggttctagggttagcatcatgtattctccttgcatttgtgaaccagtttt |
36531959 |
T |
|
| Q |
365 |
taggctacagaaccaaccctttg |
387 |
Q |
| |
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| T |
36531958 |
taggctacagaaccaaccctttg |
36531936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 140 - 387
Target Start/End: Complemental strand, 36525350 - 36525103
Alignment:
| Q |
140 |
tttgttttatggattaggaacatgagatgtcaagtagtagagtgtctcaaaatacggtcatagaggatgcagagattgatgaatatagcattaatgatag |
239 |
Q |
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|||||||||||||||||||| |||||| ||||||||| |||||||||||| || |||| ||||||||||||||| |||||||| | |||||||||||| |
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| T |
36525350 |
tttgttttatggattaggaagctgagatatcaagtagtggagtgtctcaaagtagggtcttagaggatgcagagaaagatgaatacaacattaatgatag |
36525251 |
T |
|
| Q |
240 |
tcctattgagcaagtgaggctaacagttccgatcactgatgacccttctcagccagcgctaacattccggacatgggttctagggttagcatcatgtatt |
339 |
Q |
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||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||| |||||| | |
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| T |
36525250 |
tcccattgagcaagtgaggttaacagttccaatcactgatgacccttctcagccagcactaacattcaggacatggattctaggcttagcttcatgtgtg |
36525151 |
T |
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| Q |
340 |
ctccttgcatttgtgaaccagtttttaggctacagaaccaaccctttg |
387 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36525150 |
ctccttgcatttgtgaaccagttcttaggctacagaaccaaccctttg |
36525103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 100 - 387
Target Start/End: Complemental strand, 36537833 - 36537548
Alignment:
| Q |
100 |
atgattgttgttttgttcctttcaattgttattccttttctttgttttatggattaggaacatgagatgtcaagtagtagagtgtctcaaaatacggtca |
199 |
Q |
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|||||||| |||||||||||| |||| | |||||| ||||||||||||||||||||| |||| |||||| || ||||| | ||||||| ||||| |
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| T |
36537833 |
atgattgtgtttttgttcctttgaattttc--tcctttgctttgttttatggattaggaagctgagtgttcaagtggtggagtgacacaaaatagggtca |
36537736 |
T |
|
| Q |
200 |
tagaggatgcagagattgatgaatatagcattaatgatagtcctattgagcaagtgaggctaacagttccgatcactgatgacccttctcagccagcgct |
299 |
Q |
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||||| ||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || |
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| T |
36537735 |
tagagtatgcagagacagatgaatatagcattgatgattctcctattgagcaagtgaggctaacagttccaatcactgatgacccttcacagccagcact |
36537636 |
T |
|
| Q |
300 |
aacattccggacatgggttctagggttagcatcatgtattctccttgcatttgtgaaccagtttttaggctacagaaccaaccctttg |
387 |
Q |
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|| ||||||||||||||||||||||||||||||||| | |||||||||||| ||||||| |||||||| |||| ||||||||||||| |
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| T |
36537635 |
tactttccggacatgggttctagggttagcatcatgtgtgctccttgcatttatgaaccaatttttaggatacaaaaccaaccctttg |
36537548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 36532336 - 36532286
Alignment:
| Q |
18 |
aatttgactttgttt-atcttttgttatcggaataacttatacataaatta |
67 |
Q |
| |
|
||||||||||||||| |||||||||||| || ||||||||||||||||||| |
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| T |
36532336 |
aatttgactttgttttatcttttgttatagggataacttatacataaatta |
36532286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 18704124 - 18704166
Alignment:
| Q |
21 |
ttgactttgtttatcttttgttatcggaataacttatacataa |
63 |
Q |
| |
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| T |
18704124 |
ttgactttatttatcttttgttatagaaataacttatacataa |
18704166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 48364964 - 48365010
Alignment:
| Q |
18 |
aatttgactttgttt-atcttttgttatcggaataacttatacataa |
63 |
Q |
| |
|
||||||||||| ||| |||||||||||||| |||||||||||||||| |
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| T |
48364964 |
aatttgactttattttatcttttgttatcgaaataacttatacataa |
48365010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 5088833 - 5088793
Alignment:
| Q |
18 |
aatttgactttgtttatcttttgttatcggaataacttata |
58 |
Q |
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|||||||||||||||| |||| ||||| ||||||||||||| |
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| T |
5088833 |
aatttgactttgtttagctttagttataggaataacttata |
5088793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 24836284 - 24836332
Alignment:
| Q |
18 |
aatttgactttgttt-atcttttgttatcggaataacttatacataaat |
65 |
Q |
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|
||||||||||| ||| |||||||||||| | |||||||||||||||||| |
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| T |
24836284 |
aatttgactttattttatcttttgttatagaaataacttatacataaat |
24836332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 34544547 - 34544583
Alignment:
| Q |
29 |
gtttatcttttgttatcggaataacttatacataaat |
65 |
Q |
| |
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|||||||||||||||| | |||||||||||||||||| |
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| T |
34544547 |
gtttatcttttgttatagaaataacttatacataaat |
34544583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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