View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9881_high_10 (Length: 344)
Name: NF9881_high_10
Description: NF9881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9881_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 4205761 - 4206083
Alignment:
| Q |
17 |
ataagaaggaactataattttacttctcttgattttggacctcgttttggtattgacacaagaaatcattagaatatttcatttataaatgtgaaattat |
116 |
Q |
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| T |
4205761 |
ataagaaggaactataattttacttctcttgattttggacctcgttttggtattgacacaagaaatcattagaatatttcatttataaatttgaaattat |
4205860 |
T |
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| Q |
117 |
tttctttgttttccgtaattattttgcattcttgatttgtaaatattctcaatttcatgatgttcatgttaccagttgagctggaaaagcaaacattttg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4205861 |
tttctttgttttccgtaattattttgcattcttgatttgtaaatattctcaatttcatgatgttcattttaccagttgagctggaaaagcaaacattttg |
4205960 |
T |
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| Q |
217 |
tgatctaaaagtcctcaataacacagagaactatgttgctttcaaggtaatcaattagcggcttcacattcctcaacttacttcttgttgctaaatgtgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4205961 |
tgatctaaaagtcctcaataacacagagaactatgttgctttcaaggtaatcaattagcggcttcacattcctcaacttacttcttgttgctaaatgtgt |
4206060 |
T |
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| Q |
317 |
ttttctctacattattctctgct |
339 |
Q |
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|||||||||||||||||| |||| |
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| T |
4206061 |
ttttctctacattattctttgct |
4206083 |
T |
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